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Use standardized bioregistry dump #38

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Sep 27, 2023
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Use standardized bioregistry dump #38

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Use standardized bioregistry dump 
This version has 380 ontologies instead of just a small number because of the way the data structure works.
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@cthoyt
cthoyt authored Sep 27, 2023
commit 2224aed082312990a07c2ca34d453a0a5949a505
4 changes: 2 additions & 2 deletions archivo/crawling/sources.py
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Expand Up @@ -25,8 +25,8 @@ def get_prefix_cc_urls() -> Iterable[str]:


def get_bioregistry_urls() -> Iterable[str]:

resp_json = requests.get("https://bioregistry.io/api/registry?format=json").json()
url = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/registry/registry.json"
resp_json = requests.get(url).json()

relevant_keys = ["download_rdf", "download_owl"]

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