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binned_scores.loc.sample
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#This is a sample file distributed with Galaxy that enables tools
#to use a directory of FileBinnedArray data files. You will need
#to create these data files and then create a binned_scores.loc file
#similar to this one (store it in this directory ) that points to
#the directories in which those files are stored. The binned_scores.loc
#file has this format (white space characters are TAB characters):
#
#<build> <description> <dir>
#
#So, for example, if you had hg16 ENCODE binCons on MLAGAN alignments
#stored in /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan,
#then the binned_scores.loc entry would look like this:
#
#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
#
#and your /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
#directory would contain all of your "binned" files (e.g.):
#
#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 ENm001
#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 ENm002
#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 ENm003
#...etc...
#
#Your binned_scores.loc file should include an entry per line for each
#"binned" file you have stored. For example:
#
#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
#hg16 ENCODE binCons on TBA alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_tba
#hg16 ENCODE GERP on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_lagan
#hg16 ENCODE GERP on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_tba
#hg16 ENCODE phastCons on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_phastcons_lagan
#hg16 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_phatcons_tba
#hg17 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg17/phastcons_encode_sep2005_tba
#hg17 phastCons on 8-species multiz, 16-Jun-2005 /depot/data2/galaxy/binned_scores/hg17/phastcons_mzPt1Mm5Rn3Cf1Gg2Fr1Dr1/
#hg17 phastCons on 17-species multiz, 13-Apr-2006 /depot/data2/galaxy/binned_scores/hg17/phastCons17way/ba
#hg17 ESPERR Regulatory Potential, 7-species, 23-Jun-2006 /depot/data2/galaxy/binned_scores/hg17/esperr_rp_7way/ba
#hg18 phastCons on 17-species multiz, 06-Apr-2006 /depot/data2/galaxy/binned_scores/hg18/phastCons17way/ba