Fix

remove broken tests -- test files no longer available

Add feature threshold indicator to zoom widget (igvteam#1196)

* implementing getVisibilityWindow()

* Add feature threshold indicator to zoom widget

* Add an indicator to show which zoom level will start dispalying features/reads
* closes igvteam#1192

* Reduce transparency value for zoom slider viz window indicator to "25".
Update text session xml

* fix exception when feature window size was larger than the contig length

* extracted a log2 function instead of using a wierd static log2 constant everywhere

Co-authored-by: jrobinso <933148+jrobinso@users.noreply.github.com>

Add feature threshold indicator to zoom widget (igvteam#1196)

* implementing getVisibilityWindow()

* Add feature threshold indicator to zoom widget

* Add an indicator to show which zoom level will start dispalying features/reads
* closes igvteam#1192

* Reduce transparency value for zoom slider viz window indicator to "25".
Update text session xml

* fix exception when feature window size was larger than the contig length

* extracted a log2 function instead of using a wierd static log2 constant everywhere

Co-authored-by: jrobinso <933148+jrobinso@users.noreply.github.com>

Add NPE protection to alignment sort method.

update batch scripts

Fixes igvteam#1252, igvteam#1245

Fix Sahshimi plot gene track SVG peformance bug.

Splice junction track scaling issues (fixes igvteam#1015)

* Autoscale correctly in expanded mode
* Refresh view on scaling state change
* Add menu item to explicitly set depth
* Save autoscale & maxDepth state to session

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