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Commits on Jan 27, 2025

• Merge pull request #2202 from cogent3/dependabot/pip/ruff-0.9.3

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• Bump ruff from 0.9.2 to 0.9.3

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Commits on Jan 22, 2025

• Merge pull request #2201 from GavinHuttley/develop

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Commits on Jan 21, 2025

• DEV: merged with upstream changes

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• DEV: updated numba version for python 3.13

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• Merge pull request #2199 from cogent3/dependabot/pip/ruff-0.9.2

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Commits on Jan 20, 2025

• Bump ruff from 0.9.1 to 0.9.2

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Commits on Jan 17, 2025

• Merge pull request #2197 from GavinHuttley/develop

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• DEV: merged with upstream

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• TST: more explicit test for getting parent coords

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• MAINT: add type hints for other methods using ndarray

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• MAINT: add type hints for __array__ method

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• Merge pull request #2196 from GavinHuttley/develop

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Commits on Jan 16, 2025

• MAINT: make signature of __array__ methods consistent with requirement

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• DOC: simplified install recommendations

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• DEV: bumped version to 2024.12.19a2

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• Merge pull request #2195 from GavinHuttley/develop

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• TST: extend tests for to_indices

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• ENH: apply feature name to result of feature slicing, fixes #2191

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• STY: pre-commit linting with ruff

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• STY: linited by updated ruff

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• Merge pull request #2189 from cogent3/dependabot/pip/pillow-11.1.0

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• Merge pull request #2192 from cogent3/dependabot/pip/scipy-1.15.1

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• Merge pull request #2193 from cogent3/dependabot/pip/ruff-0.9.1

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• Merge pull request #2194 from GavinHuttley/develop

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• BUG: KmerAlphabet.to_indices uses alphabet dtype

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Commits on Jan 13, 2025

• Bump ruff from 0.8.4 to 0.9.1

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• Bump scipy from 1.14.1 to 1.15.1

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Commits on Jan 6, 2025

• Bump pillow from 11.0.0 to 11.1.0

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Commits on Dec 28, 2024

• Merge pull request #2184 from cogent3/dependabot/pip/ruff-0.8.4

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• Merge pull request #2186 from cogent3/dependabot/pip/psutil-6.1.1

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Commits on Dec 23, 2024

• Bump psutil from 6.1.0 to 6.1.1

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• Bump ruff from 0.8.3 to 0.8.4

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Commits on Dec 19, 2024

• Merge pull request #2183 from GavinHuttley/develop

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• DEV: more edits to get reelase action doc testing working

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