diff --git a/api/Makefile.in b/api/Makefile.in
deleted file mode 100644
index 4353ea80a2..0000000000
--- a/api/Makefile.in
+++ /dev/null
@@ -1,829 +0,0 @@
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diff --git a/java/com/Makefile.in b/java/com/Makefile.in
index ce29372503..4011ae5798 100644
--- a/java/com/Makefile.in
+++ b/java/com/Makefile.in
@@ -36,11 +36,10 @@ host_triplet = @host@
 subdir = java/com
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diff --git a/tessdata/configs/Makefile.in b/tessdata/configs/Makefile.in
index 54184fff44..4db4c8ec08 100644
--- a/tessdata/configs/Makefile.in
+++ b/tessdata/configs/Makefile.in
@@ -37,11 +37,10 @@ host_triplet = @host@
 subdir = tessdata/configs
 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
-	$(top_srcdir)/configure.ac
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/config_auto.h
 CONFIG_CLEAN_FILES =
 CONFIG_CLEAN_VPATH_FILES =
@@ -112,10 +111,9 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
+LIBLEPT_HEADERSDIR = @LIBLEPT_HEADERSDIR@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
-LIBTIFF_CFLAGS = @LIBTIFF_CFLAGS@
-LIBTIFF_LIBS = @LIBTIFF_LIBS@
 LIBTOOL = @LIBTOOL@
 LIPO = @LIPO@
 LN_S = @LN_S@
diff --git a/tessdata/tessconfigs/Makefile.in b/tessdata/tessconfigs/Makefile.in
index e89f1f251e..04ea80e813 100644
--- a/tessdata/tessconfigs/Makefile.in
+++ b/tessdata/tessconfigs/Makefile.in
@@ -37,11 +37,10 @@ host_triplet = @host@
 subdir = tessdata/tessconfigs
 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
-	$(top_srcdir)/configure.ac
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/config_auto.h
 CONFIG_CLEAN_FILES =
 CONFIG_CLEAN_VPATH_FILES =
@@ -112,10 +111,9 @@ INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
+LIBLEPT_HEADERSDIR = @LIBLEPT_HEADERSDIR@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
-LIBTIFF_CFLAGS = @LIBTIFF_CFLAGS@
-LIBTIFF_LIBS = @LIBTIFF_LIBS@
 LIBTOOL = @LIBTOOL@
 LIPO = @LIPO@
 LN_S = @LN_S@
diff --git a/testing/Makefile.in b/testing/Makefile.in
deleted file mode 100644
index 8df0560ce6..0000000000
--- a/testing/Makefile.in
+++ /dev/null
@@ -1,365 +0,0 @@
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-# gives unlimited permission to copy and/or distribute it,
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