Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Jan 29, 2024

• Version bump: bcbio-gff-v0.7.1

  chapmanb

  committedJan 29, 2024
  9c6d83e

• Do not smother Biopython deprecation warnings. Fixes #139

  chapmanb

  committedJan 29, 2024
  03e96ca

• Merge pull request #141 from fubar2/master

  chapmanb

  authoredJan 29, 2024
  dd0dd8f

• Merge pull request #135 from timgates42/bugfix_typos

  chapmanb

  authoredJan 29, 2024
  0db7865

Commits on Jan 2, 2024

• updates for biopython 1.86

  fubar2

  committedJan 2, 2024
  eec72c3

Commits on Mar 13, 2023

• Merge pull request #137 from abretaud/unknownseq

  chapmanb

  authoredMar 13, 2023
  81442c0

Commits on Feb 15, 2023

• Fix error with biopython 1.81

  abretaud

  committedFeb 15, 2023
  8a36af0

Commits on Jul 19, 2022

• docs: Fix a few typos

  timgates42

  committedJul 19, 2022
  63224f4

Commits on Nov 18, 2021

• v0.6.9: fix ID matching when no rec.id fixes #134

  chapmanb

  committedNov 18, 2021
  dbfb527

Commits on Nov 3, 2021

• v0.6.8: match records between fasta and GFF with NCBI style headers

  chapmanb

  committedNov 3, 2021
  438f424

Commits on Oct 6, 2021

• v0.6.7: handle problem sequence-region directives without contigs

  chapmanb

  committedOct 6, 2021
  599c64c

• GFF to Genbank: support latest biopython without alphabets

  chapmanb

  committedOct 6, 2021
  d3c51a2

Commits on Jun 8, 2021

• Merge pull request #133 from peterjc/patch-1

  chapmanb

  authoredJun 8, 2021
  74502a0

Commits on Jun 3, 2021

• Support zero length reads in FakeHandle

  peterjc

  authoredJun 3, 2021
  f980be9

Commits on Feb 12, 2020

• Merge pull request #129 from sergiuser1/patch-1

  chapmanb

  authoredFeb 12, 2020
  3ba0ec4

Commits on Feb 10, 2020

• Add license to setup.py

  sergiuser1

  authoredFeb 10, 2020
  e3300a5

Commits on Jul 9, 2019

• Merge pull request #127 from tipabu/py3-binary-mode

  chapmanb

  authoredJul 9, 2019
  4bb602b

Commits on Jul 8, 2019

• Fix tests on py2

  tipabu

  committedJul 8, 2019
  33869f3

• py3: raise TypeError on binary file handle

  tipabu

  committedJul 8, 2019
  76f9c11

Commits on Jun 19, 2019

• Merge pull request #126 from DavyCats/dc_gffparser_fix_crash_on_gene_line

  roryk

  authoredJun 19, 2019
  6ecbdc8

• fix crashes when parsing gtf files which contain gene lines

  DavyCats

  committedJun 19, 2019
  a4c2638

Commits on Mar 28, 2019

• Ginkgo data talk: finalize and improve after practice

  chapmanb

  committedMar 28, 2019
  45b95cb

• Merge pull request #124 from rhpvorderman/patch-1

  chapmanb

  authoredMar 28, 2019
  bad8ad7

Commits on Mar 27, 2019

• Ginkgo data work in progress for BIG meeting

  chapmanb

  committedMar 27, 2019
  eb9c3cf

• Add biopython dependency

  rhpvorderman

  authoredMar 27, 2019
  d59d17b

Commits on Mar 17, 2019

• v0.6.6: fix for LICENSE file install bioconda/bioconda-recipes#13873

  chapmanb

  committedMar 17, 2019
  15c1d5e

Commits on Mar 14, 2019

• Glimmer: ensure have Bio.Seq for reverse complement

  chapmanb

  committedMar 14, 2019
  90f3bb7

Commits on Mar 12, 2019

• Python 3 compatibility: reduce #123

  chapmanb

  committedMar 12, 2019
  112732c

Commits on Mar 10, 2019

• Avoid reduce errors with missing exon sequence. Fixes #123

  chapmanb

  committedMar 10, 2019
  6eff658

Commits on Mar 5, 2019

• Merge pull request #122 from dfornika/patch-1

  chapmanb

  authoredMar 5, 2019
  91eea6b

Commits on Mar 3, 2019

• Add LICENSE file to Manifest.in

  dfornika

  authoredMar 3, 2019
  7ef85bd

Commits on Mar 1, 2019

• Recommendations for variant calling and bcbio CWL runs

  chapmanb

  committedMar 1, 2019
  2615a41

Commits on Feb 11, 2019

• Bcbio GFF v0.6.5: Python 3 compatibility; fixes #120

  chapmanb

  committedFeb 11, 2019
  9b72800

Commits on Jan 10, 2019

• Notes from BIG community meetings

  chapmanb

  committedJan 10, 2019
  9e420bd

Commits on Oct 10, 2018

• talks: teaching slides for NGS long course at Harvard Chan

  chapmanb

  committedOct 10, 2018
  2be0ccf

Pagination

PreviousNext