Spatial Image Analysis of Tissues

R package for the analysis of OPAL multiplex immunohistochemistry images.

UPDATE December 2022: THIS REPO IS NOW DEPRECATED For the latest version of SPIAT, please visit: https://github.com/TrigosTeam/SPIAT. SPIAT is also available on Bioconductor: https://bioconductor.org/packages/release/bioc/html/SPIAT.html

Authors:

Yuzhou Feng, Tianpei Yang, Volkan Ozcoban, Anu Pasam, Nikolce Kocovski, Angela Pizzolla, Yu-Kuan Huang, Greg Bass, Simon P. Keam, Paul J. Neeson, Shahneen K. Sandhu, David L. Goode, Anna S. Trigos

Pre-print available: SPIAT: An R package for the Spatial Image Analysis of Cells in Tissues https://www.biorxiv.org/content/10.1101/2020.05.28.122614v1