Adding Code to Visualize Example Images #122
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Love it! |
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The one issue with the logic (IIUC it correctly) is that it rescales each image, so that makes it hard to compare one image with another. |
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oh, i realized I should tag @jr0th - thanks for making your code public and reusable! |
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Sure thing! What an honor! |
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The honor is mine! I added jr0th/segmentation#7 where I strongly recommend that you add a license to this body of work 😄 |
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I add code that is modified from https://github.com/jr0th/segmentation/blob/master/visualization/CellArt.ipynb and using input from @MarziehHaghighi to visualize example cell painting images
I will use these images in an updated Figure 1A.
Updating Cell Colors
I also updated cell colors in this PR. This should have probably been a different PR. I will update cell line colors again after feedback from special topics (too similar to other palette could be somewhat confusing/misleading)