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Commits on Sep 6, 2021

• Some material for the website and documentation

  bradduthie

  committed
  6cdcc15

Commits on Sep 5, 2021

• Finish the first vignette, and boost the version number

  bradduthie

  committed
  fb792ab

• Fix an error associated with movement bouts. The random integer sampling wasn't set accurately, and whether individuals eat on bouts and consume pesticide on bouts was not set correctly

  bradduthie

  committed
  c9bf733

• Complete the table of arguments taken by the simulation in the main vignette

  bradduthie

  committed
  1555829

• Introduce a minimum and a maximum age for metabolism to take effect.

  bradduthie

  committed
  5534efe

• Clean up some of the reproduction functions a bit and assign a threshold pesticide tolerance for reproduction, which had not yet been done

  bradduthie

  committed
  f721e7e

• Set up a baseline metabolic rate so that variation around the rate can be specified more easily. Now, e.g., a baseline metabolic rate of 1 could be specified with individuals allowing to vary with …

  Show description for fde97db
  bradduthie

  committed
  fde97db

• Add the threshold of pesticide consumed for reproduction

  bradduthie

  committed
  068e506

Commits on Sep 4, 2021

• This is not an important commit -- I'm just cleaning some files up

  bradduthie

  committed
  d2c205d

• Just get the floored metabolic rate done so that this does not come back to be a problem for Issue #38 -- I will still want to do the baseline rate tomorrow

  bradduthie

  committed
  9ee08c3

• Add some more information to the vignette; this was the point at which the lack of consumption Issue #38 was found and resolved

  bradduthie

  committed
  62e3e3d

• Introduce the metabolism function in R so that it can also be modelled as a trait of an individual

  bradduthie

  committed
  1fb9067

• Introduce metabolism into the aging function, which burns some of the consumed food

  bradduthie

  committed
  de5f05f

• Introduce a function to refresh consumption in each time step and thereby resolve issue #38 -- where individuals were getting credit for food that they had already consumed and therefore should not…

  Show description for 7ef871c
  bradduthie

  committed
  7ef871c

• Finish the section on mine_gmatrix function in the vignette

  bradduthie

  committed
  61337a8

• Add some mine_gmatrix outputs to the R package to be used as examples in the vignette and by users

  bradduthie

  committed
  63af980

• Initialise a bibliography for the vignette

  bradduthie

  committed
  5db1c4a

• Add a note and a minor fix to the OR statement in the code

  bradduthie

  committed
  16efd21

Commits on Sep 2, 2021

• Include the appropriate R build ignore and git ignore

  bradduthie

  committed
  8064438

• Start the R package vignette, which will also be used as a page on the website

  bradduthie

  committed
  f9cbf60

Commits on Aug 26, 2021

• Add a notebook entry with output for the null simulations

  bradduthie

  committed
  8fdaa17

Commits on Aug 24, 2021

• I'm just bumping the version number now. There is some more to do before submitting to CRAN, including the creation of at least one vignette explaining how to run a simple simulation; a second expl…

  Show description for a634810
  bradduthie

  committed
  a634810

• This just confirms the removal from the previous commit, though the assets and data are now added into the notebook

  bradduthie

  committed
  e6174b1

• Moving some files around and into the notebook so that the package can pass all of the CRAN checks -- this includes the assets folder @rosemckeon made for the toy model (the whole toy model is now …

  Show description for c21b89f
  bradduthie

  committed
  c21b89f

• Moving some folders to pass CRAN checks. Nearly there, but need to ensure that some CSV files are not printed in the testing process

  bradduthie

  committed
  d7b4998

• Add relevant tests and documentation for the main four R functions to be run by the user

  bradduthie

  committed
  fa4144b

• Fix the name for @luc-bussiere and create a test of the landscape properties

  bradduthie

  committed
  ba2c926

• Update the description file to include contributors and a summary of the package

  bradduthie

  committed
  8242ad7

• Remove the assets from the Rbuild since these are not used in the R package itself

  bradduthie

  committed
  0fc49be

• Remove some documentation that users should never need to consult and a file that was not being used

  bradduthie

  committed
  51fd173

Commits on Aug 19, 2021

• Fix typo in the notes

  bradduthie

  committed
  35a31d5

• add a new notebook entry with some initial results

  bradduthie

  committed
  79e7364

Commits on Aug 13, 2021

• Fix the error on where individuals feed

  bradduthie

  committed
  6d46e97

• Add some test simulation parameters

  bradduthie

  committed
  ef19a49

• Fix the problem with individuals feeding when there is nothing to feed on as mentioned in Issue #37 -- this leads to different dynamics, naturally, which need to be explored

  bradduthie

  committed
  769daa5

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