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AnalysisScripts

Scripts for additional analyses

Generate VCF file per accession

generate_accesion_vcf.py

Clean VCF for NAVIP analysis

navip_clean_vcf.py

Prepare FASTA and GFF file for SnpEff and NAVIP analysis

prep_fasta_and_gff.py

Analysis of amino acid substitution predictions done by SnpEff and NAVIP

aa_sub_check.py