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1. s4hts/HTStream s4hts/HTStream Public

   A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

   C++ 49 9

2. Publications Publications Public

   Repository containing scripts/programs used in various published works associated with Dr. Peter Henry.

   Python 1

3. impact impact Public archive

   Identifies Multiple Peaks and Counts Transcripts. Quantifies gene expression from TAGseq libraries by clustering reads.

   C++

4. SpliceSlice_Pipeline SpliceSlice_Pipeline Public

   Pipeline for identification and statistical analysis of intronic Branch Point sequences and Polypyrimidine tracts.

   Python

5. CUDA_Bioinformatics_Tools CUDA_Bioinformatics_Tools Public

   A collection of commandline tools for common bioinfomatics analyses that utilizes GPU-computing.

   C++

6. Knotty Knotty Public

   ECS 129 Final Project (by Bradley Jenner, Shashank Shastry, and Savita Sastry) - Python tool for knot detection in protein structures using an implementation of the Taylor Knot Detection Algorithm …

   Python 1