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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 55 28

Repositories

Showing 10 of 90 repositories
  • Cq-VIEW Public

    A qPCR-based companion to the C-VIEW (COVID-19 VIral Epidemiology Workflow) pipeline that calculates samples' viral loads.

    biocore/Cq-VIEW’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 26, 2024
  • q2-surpi Public

    A QIIME 2 plugin that connects SURPI+ results to QIIME 2 for analysis

    biocore/q2-surpi’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 26, 2024
  • gemelli Public

    Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

    biocore/gemelli’s past year of commit activity
    Python 73 BSD-3-Clause 18 31 4 Updated Sep 26, 2024
  • calour Public

    exploratory and interactive microbiome analyses based on heatmaps

    biocore/calour’s past year of commit activity
    Python 27 BSD-3-Clause 22 61 3 Updated Sep 25, 2024
  • metagenomics_pooling_notebook Public

    Jupyter notebooks to assist with sample processing

    biocore/metagenomics_pooling_notebook’s past year of commit activity
    Python 8 MIT 16 41 (2 issues need help) 4 Updated Sep 16, 2024
  • mg-scripts Public

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    biocore/mg-scripts’s past year of commit activity
    Python 1 BSD-3-Clause 5 16 9 Updated Sep 14, 2024
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface’s past year of commit activity
    Jinja 1 BSD-3-Clause 17 44 2 Updated Sep 13, 2024
  • micov Public

    Aggregate genome coverage

    biocore/micov’s past year of commit activity
    Python 3 1 8 0 Updated Sep 11, 2024
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    biocore/microsetta-private-api’s past year of commit activity
    Python 6 BSD-3-Clause 19 66 6 Updated Sep 9, 2024
  • microsetta-admin Public
    biocore/microsetta-admin’s past year of commit activity
    Python 0 BSD-3-Clause 10 15 4 Updated Aug 20, 2024
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