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@bhc-rbct

Robert Bosch Centre for Tumour Diseases (RBCT)

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  1. nf-rnaseq nf-rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow

  2. Filter-A2A-loops-for-active-genes Filter-A2A-loops-for-active-genes Public

    Python

  3. nf-atacseq nf-atacseq Public

    Forked from nf-core/atacseq

    ATAC-seq peak-calling and QC analysis pipeline

    Nextflow

  4. nf-chipseq nf-chipseq Public

    Forked from nf-core/chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

    Nextflow

  5. nf-hic nf-hic Public

    Forked from nf-core/hic

    Analysis of Chromosome Conformation Capture data (Hi-C)

    Nextflow

  6. nf-cutandrun nf-cutandrun Public

    Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    Nextflow

Repositories

Showing 10 of 12 repositories
  • nf-scrnaseq Public Forked from nf-core/scrnaseq

    A single-cell RNAseq pipeline for 10X genomics data

    bhc-rbct/nf-scrnaseq’s past year of commit activity
    Nextflow 0 MIT 179 0 0 Updated Dec 11, 2024
  • nf-circrna Public Forked from nf-core/circrna

    circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

    bhc-rbct/nf-circrna’s past year of commit activity
    Nextflow 0 MIT 26 0 0 Updated Nov 14, 2024
  • nf-sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    bhc-rbct/nf-sarek’s past year of commit activity
    Nextflow 0 MIT 419 0 0 Updated Nov 9, 2024
  • images_quantify_red_in_blue_signal Public
    bhc-rbct/images_quantify_red_in_blue_signal’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 28, 2024
  • nf-chipseq Public Forked from nf-core/chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

    bhc-rbct/nf-chipseq’s past year of commit activity
    Nextflow 0 MIT 150 0 0 Updated Oct 23, 2024
  • nf-rnavar Public Forked from nf-core/rnavar

    gatk4 RNA variant calling pipeline

    bhc-rbct/nf-rnavar’s past year of commit activity
    Nextflow 0 MIT 33 0 0 Updated Jun 27, 2024
  • nf-fetchngs Public Forked from nf-core/fetchngs

    Pipeline to fetch metadata and raw FastQ files from public databases

    bhc-rbct/nf-fetchngs’s past year of commit activity
    Nextflow 0 MIT 76 0 0 Updated May 21, 2024
  • nf-hic Public Forked from nf-core/hic

    Analysis of Chromosome Conformation Capture data (Hi-C)

    bhc-rbct/nf-hic’s past year of commit activity
    Nextflow 0 MIT 56 0 0 Updated May 9, 2024
  • nf-cutandrun Public Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    bhc-rbct/nf-cutandrun’s past year of commit activity
    Nextflow 0 MIT 50 0 0 Updated May 9, 2024
  • nf-atacseq Public Forked from nf-core/atacseq

    ATAC-seq peak-calling and QC analysis pipeline

    bhc-rbct/nf-atacseq’s past year of commit activity
    Nextflow 0 MIT 123 0 0 Updated May 9, 2024
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