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Heuristic constructing species trees from gene trees

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Alt text for image FROGTOAST (FROm Gene-trees TO A Species Tree )

Heuristic constructing species trees from gene trees

  • implemented Symmetric Duplication cost metric defined in: https://epubs.siam.org/doi/10.1137/S0097539798343362

  • tested various search paradigms to explore tree space.

  • defined a new tree rearrangement method we call SubtreeSwap and test against traditional NNI and SRP algorithms

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