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Commits on Apr 25, 2024

• patch LCindexedCSVdatabaseReadLocalConnectomeClass::countConnectionsLocalMatrix:INDEXED_CSV_DATABASE_READ_LOCAL_CONNECTOME_COUNT_CONNECTIONS_BY_EXCITATION_TYPE - for(int sourceExcitationTypeIndex=0…

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Commits on Jul 26, 2023

• add option INDEXED_CSV_DATABASE_READ_LOCAL_CONNECTOME_COUNT_CONNECTIONS_CONTRALATERAL - count contralateral connections (that have non/recurrent contralateral connections)

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Commits on Jul 24, 2023

• patch template connections_IE_part2-DirectionFlow3:inhibitConnectionRadialGradient2FlowDirection3 - stop-color=#ff0000

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Commits on Jul 22, 2023

• add option LOCAL_CONNECTOME_VISUALISATION_FLOW_CONTRA_AND_IPSI_LATERAL: visualise all LOCAL_CONNECTOME_DATASET_CONNECTIONS_FIELD_INDEX_FLOW_TYPE_CONTRALATERAL_LEFT/LOCAL_CONNECTOME_DATASET_CONNECTI…

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• standardise 2D/3D layered visualisation generation to assign layer specific colours to last/#3 visualisation (instead of first/#1)

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• add option LOCAL_CONNECTOME_VISUALISATION_TEMPLATES_LAYERED_PART1_ONLY - remove redundant templates connections_IE_part2-LayeredDirection2/connections_IE_part2-LayeredDirectionFlow1/connections_IE_…

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• add option INDEXED_CSV_DATABASE_LDC/ADC/CEC:LOCAL_CONNECTOME_VISUALISATION_FLOW_CONTRAIPSILATERAL - display contralateral/ipsilateral flow

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Commits on Jul 16, 2023

• update README - add examples

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• start INDEXED_CSV_DATABASE_CEC - caenorhabditisElegansConnectome

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Commits on Jul 10, 2023

• add option INDEXED_CSV_DATABASE_READ_LOCAL_CONNECTOME_COUNT_CONNECTIONS_RECURRENT_MIRROR_TWINS - only count recurrent connections for mirror twin neurons

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Commits on Jul 6, 2023

• add support for INDEXED_CSV_DATABASE_ADC:!INDEXED_CSV_DATABASE_DC_NEURON_LAYERS_REUSE_H01_TEMPLATES

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Commits on Jul 5, 2023

• rename repository H01LocalConnectome to LocalConnectome

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• INDEXED_CSV_DATABASE_DC: upgrade INDEXED_CSV_DATABASE_DC_ENFORCE_EXCITATORYINHIBITORY_NEURONS_CONNECTIONS implementation - intermediary development stage for visualisation (visualisation currently …

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Commits on Jul 4, 2023

• start INDEXED_CSV_DATABASE_ADC - adultDrosophilaConnectome (local connectome analysis only)

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Commits on Jul 2, 2023

• standardise LOCAL_CONNECTOME_DATASET_NEURONS_FIELDS - remove redundant fields

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Commits on Apr 15, 2023

• merge INDEXED_CSV_DATABASE_READ_LOCAL_CONNECTOME_COUNT_CONNECTIONS_RECURRENT and INDEXED_CSV_DATABASE_READ_LOCAL_CONNECTOME_COUNT_CONNECTIONS_RECURSIVE

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Commits on Mar 26, 2023

• INDEXED_CSV_DATABASE_LDC_NEURON_TYPES_REFORMAT: update neuronTypes.txt - rename PNs-somato to PN-somato (L1), rename KCs to KC (L4 visualisation fix)

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Commits on Mar 25, 2023

• add INDEXED_CSV_DATABASE_LDC_NEURON_TYPES_REFORMAT - change all Xs to X neuron type (e.g. PNs -> PN) - neuronTypesCreation-INDEXED_CSV_DATABASE_LDC_NEURON_TYPES_REFORMAT

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Commits on Mar 23, 2023

• extract calculateConnectionExcitationType from H01indexedCSVdatabaseReadLocalConnectomeClass::countConnectionsLocalMatrix/countConnectionsLocal

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Commits on Mar 22, 2023

• add INDEXED_CSV_DATABASE_PREPROCESS_GENERATE_LOCAL_CONNECTOME_NEURONS_DATASET_FROM_SKELETONS

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Commits on Mar 17, 2023

• start INDEXED_CSV_DATABASE_LDC - larvalDrosophilaConnectome (local connectome analysis only)

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Commits on Feb 23, 2023

• add INDEXED_CSV_DATABASE_QUERY_COUNT_CONNECTIONS_RECURRENT:INDEXED_CSV_DATABASE_QUERY_COUNT_CONNECTIONS_RECURRENT_NEURONS - count number of neurons with recurrent connections

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Commits on Feb 22, 2023

• add option INDEXED_CSV_DATABASE_QUERY_COUNT_CONNECTIONS_RECURRENT - measure immediate recurrent connectivity of local connectome neurons (a -> b -> a)

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Commits on Nov 30, 2022

• update H01indexedCSVdatabaseQueryClass::printNumberOfConnections - if connectionTypesDerivedFromPresynapticNeuronsOrEMimages, print unknown for externalConnectome neuron excitationType dependent va…

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Commits on Nov 18, 2022

• patch README.md - repeated word

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Commits on Aug 26, 2022

• patch README.md - 3D (LDR)

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Commits on Mar 15, 2022

• INDEXED_CSV_DATABASE_QUERY_GENERATE_LARGE_MODEL_NORMALISE_LOCAL_CONNECTIVITY_USE_LAYER_BOUNDS - neural spatial connectivity model aligned to localised cortical positive flow direction (based on pre…

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Commits on Mar 7, 2022

• start INDEXED_CSV_DATABASE_QUERY_GENERATE_LARGE_MODEL: generateLargeModelNeuronsAndConnections - generate large artificial cortical model based on network properties; extrapolate z -> same size as x/y

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• INDEXED_CSV_DATABASE_QUERY_COUNT_CONNECTIONS_LOCAL - update H01indexedCSVdatabaseQueryClass::queryIndexedCSVdatabaseByNeuronDatasetOrListFile - only execute countConnectionsLocal if(queryMode == QU…

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Commits on Dec 14, 2021

• move visualise/trace output to examples folder

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Commits on Dec 13, 2021

• move H01LocalConnectome/dev/corticalLearningAlgorithmSimulation/autoencoderSimulation to ANNtf/autoencoder

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Commits on Dec 7, 2021

• INDEXED_CSV_DATABASE_QUERY_COUNT_CONNECTIONS_LOCAL - independently count the connections within the local connectome connections dataset

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Commits on Dec 4, 2021

• INDEXED_CSV_DATABASE_TRACE_LOCAL_CONNECTOME - fix bug in H01indexedCSVdatabaseTraceLocalConnectomeClass::traceLocalConnectomeCSVdatasetFile; H01indexedCSVdatabaseOperations.readLocalConnectomeNeuro…

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Commits on Dec 1, 2021

• INDEXED_CSV_DATABASE_QUERY_CRAWL_CONNECTIONS_COUNT_NUMBER_INCOMING_OUTGOING_EXCITATORY_INHIBITORY_SYNAPSES - upgrade H01indexedCSVdatabaseQueryClass::crawlIndexedCSVdatabase to record synapse type

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Commits on Nov 28, 2021

• LOCAL_CONNECTOME_OFFICAL_RELEASE_C3_SOMAS - use official somas dataset (https://h01-release.storage.googleapis.com/data.html - gs://h01-release/data/20210601/c3/tables/somas.csv)

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