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  • Florida Bureau of Public Health Laboratories

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arodzh-sudo/README.md

👨‍💻 Arnold Rodríguez-Hilario

Bioinformatician | Public Health Enthusiast | Microbial Genomics Specialist

👋 Hi, I’m Arnold Rodríguez-Hilario, a Public Health Bioinformatician at the Florida Bureau of Public Health Laboratories. With a background in microbiology, molecular biology, and bioinformatics, I leverage computational tools to improve public health surveillance and pathogen detection.

🔬 Interests

  • 🦠 Pathogen Genomics: From viral genomes to bacterial resistance, I love diving deep into microbial data.
  • 🌎 Public Health Applications: Using genomic insights to combat infectious diseases and improve health outcomes.
  • 🧬 Molecular Biology & Metagenomics: Decoding complex microbial communities and their interactions.

🤝 Collaboration

I’m eager to collaborate on:

  • Pathogen Genomics Pipelines: Streamlining workflows with Python and Nextflow using containerization (Singularity) for reproducibility and scalability.
  • Genomic Epidemiology: Exploring outbreak dynamics and evolutionary trends using genome data.
  • Metagenomic Analysis: Identifying and characterizing microbial communities in diverse environments.

📚 Current Projects

  • 🛠️ Developing reference-based assembly pipelines for Oropouche virus (OROV).
  • 🛠️ Developing metagenomic sequence analysis pipeline for outbreak investigations in public health.
  • 🧪 Building phylogenetic trees with IQ-TREE and Nextstrain to study viral evolution and segment dynamics.

🌟 Fun Facts

  • 🐱 A proud cat dad to a playful 3-year-old who keeps me company during late-night coding sessions.
  • 🎞️ A dedicated film enthusiast with a special love for cult movies, always on the lookout for hidden gems and cinematic masterpieces.

Popular repositories Loading

  1. arodzh-sudo arodzh-sudo Public

    Config files for my GitHub profile.

  2. nextstrain.org nextstrain.org Public

    Forked from nextstrain/nextstrain.org

    The Nextstrain website

    JavaScript

  3. MultiQC MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python

  4. docker-builds docker-builds Public

    Forked from StaPH-B/docker-builds

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile

  5. pango-designation pango-designation Public

    Forked from cov-lineages/pango-designation

    Repository for suggesting new lineages that should be added to the current scheme

    Jupyter Notebook