Update parallel processor library, bump ggcat version to 1.1.1

algbio · Dec 18, 2024 · fde509f · fde509f
1 parent 0953406
commit fde509f
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Showing 20 changed files with 61 additions and 78 deletions.
diff --git a/Cargo.lock b/Cargo.lock
diff --git a/crates/api/Cargo.toml b/crates/api/Cargo.toml
@@ -2,7 +2,7 @@
 authors = ["Andrea Cracco <guilucand@gmail.com>"]
 edition = "2021"
 name = "ggcat-api"
-version = "0.1.0"
+version = "1.1.1"
 
 [lib]
 crate-type = ["rlib", "staticlib"]
@@ -24,10 +24,10 @@ colors = { package = "ggcat_colors", path = "../colors" }
 utils = { package = "ggcat_utils", path = "../utils" }
 
 fdlimit = "0.3.0"
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 rayon = "1.10.0"
 dynamic-dispatch = "0.5.4"
 parking_lot = "0.12.3"
 uuid = { version = "1.9.1", features = ["v4"] }
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 anyhow = "1.0.89"
diff --git a/crates/api/example/Cargo.toml b/crates/api/example/Cargo.toml
@@ -6,5 +6,5 @@ edition = "2021"
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
 [dependencies]
-ggcat-api = { version = "0.1.0", path = ".." }
+ggcat-api = { version = "1.1.1", path = ".." }
 itertools = "0.13.0"
diff --git a/crates/assembler/Cargo.toml b/crates/assembler/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ggcat_assembler"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 [dependencies]
 
@@ -15,7 +15,7 @@ utils = { package = "ggcat_utils", path = "../utils" }
 dynamic-dispatch = "0.5.4"
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 streaming-libdeflate-rs = "0.1.5"
 nightly-quirks = "0.1.4"
 
@@ -52,7 +52,7 @@ serde = "1.0.203"
 bincode = "1.3.3"
 crossbeam = "0.8.4"
 dashmap = "6.0.1"
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 anyhow = "1.0.89"
 
 [features]

diff --git a/crates/assembler_kmers_merge/Cargo.toml b/crates/assembler_kmers_merge/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ggcat_assembler_kmerge"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 [dependencies]
 
@@ -9,7 +9,7 @@ config = { package = "ggcat_config", path = "../config" }
 utils = { package = "ggcat_utils", path = "../utils" }
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 streaming-libdeflate-rs = "0.1.5"
 nightly-quirks = "0.1.4"
 
@@ -33,7 +33,7 @@ crossbeam = "0.8.4"
 # Profiler
 instrumenter = "0.1.3"
 parking_lot = "0.12.3"
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 
 [dev-dependencies]
 fdlimit = "0.3.0"

diff --git a/crates/assembler_minimizer_bucketing/Cargo.toml b/crates/assembler_minimizer_bucketing/Cargo.toml
@@ -1,14 +1,14 @@
 [package]
 name = "ggcat_assembler_minibuck"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 [dependencies]
 
 # Config
 config = { package = "ggcat_config", path = "../config" }
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 streaming-libdeflate-rs = "0.1.5"
 
 # Static dispatch

diff --git a/crates/capi/Cargo.toml b/crates/capi/Cargo.toml
@@ -1,14 +1,14 @@
 [package]
 name = "ggcat-cpp-bindings"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 
 [lib]
 crate-type = ["staticlib"]
 
 [dependencies]
 cxx = "1.0.124"
-ggcat-api = { version = "0.1.0", path = "../api" }
+ggcat-api = { version = "1.1.1", path = "../api" }
 static_assertions = "1.1.0"
 
 [build-dependencies]

diff --git a/crates/cmdline/Cargo.toml b/crates/cmdline/Cargo.toml
@@ -2,7 +2,7 @@
 authors = ["Andrea Cracco <guilucand@gmail.com>"]
 edition = "2021"
 name = "ggcat_cmdline"
-version = "0.1.0"
+version = "1.1.1"
 
 [[bin]]
 name = "ggcat"
@@ -50,17 +50,16 @@ dynamic-dispatch = "0.5.4"
 
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 io = { package = "ggcat_io", path = "../io" }
 colors = { package = "ggcat_colors", path = "../colors" }
 
 assembler = { package = "ggcat_assembler", path = "../assembler" }
 instrumenter = "0.1.3"
 
 querier = { package = "ggcat_querier", path = "../querier" }
-ggcat-api = { version = "0.1.0", path = "../api" }
-logging = "0.1.0"
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-api = { version = "1.1.1", path = "../api" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 
 
 [features]

diff --git a/crates/colors/Cargo.toml b/crates/colors/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "ggcat_colors"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 [dependencies]
 
@@ -11,7 +11,7 @@ config = { package = "ggcat_config", path = "../config" }
 dynamic-dispatch = "0.5.4"
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 streaming-libdeflate-rs = "0.1.5"
 nightly-quirks = "0.1.4"
 
@@ -39,7 +39,7 @@ serde = "1.0.203"
 lz4 = "1.25.0"
 bincode = "1.3.3"
 itertools = "0.13.0"
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 anyhow = "1.0.89"
 
 [features]

diff --git a/crates/config/Cargo.toml b/crates/config/Cargo.toml
@@ -1,10 +1,10 @@
 [package]
 name = "ggcat_config"
-version = "0.1.0"
+version = "1.1.1"
 edition = "2021"
 [dependencies]
 
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 parking_lot = "0.12.3"
diff --git a/crates/dumper/Cargo.toml b/crates/dumper/Cargo.toml
@@ -11,7 +11,7 @@ config = { package = "ggcat_config", path = "../config" }
 utils = { package = "ggcat_utils", path = "../utils" }
 
 # Common libraries
-parallel-processor = "0.1.18"
+parallel-processor = "0.1.19"
 streaming-libdeflate-rs = "0.1.5"
 nightly-quirks = "0.1.4"
 
@@ -30,7 +30,7 @@ csv = "1.3.0"
 parking_lot = "0.12.3"
 lz4 = "1.25.0"
 flate2 = "1.0.30"
-ggcat-logging = { version = "0.1.0", path = "../logging" }
+ggcat-logging = { version = "1.1.1", path = "../logging" }
 anyhow = "1.0.89"
 
 [features]