Skip to content

Activity

Write plausible tkinter code that thinks about all options

adamnovakpushed 19 commits to issues/5159-dockstore-metrics • 44043ce…15a72d3 • 
6 days ago

Fix typing

adamnovakpushed 1 commit to issues/5159-dockstore-metrics • 6817c22…44043ce • 
on Dec 19, 2024

Allow submitting workflow attempt metrics with toil history --submit

adamnovakpushed 1 commit to issues/5159-dockstore-metrics • 3b9bd3f…6817c22 • 
on Dec 19, 2024

Fix SQL syntax and semantics

adamnovakpushed 2 commits to issues/5159-dockstore-metrics • 1bcb05d…3b9bd3f • 
on Dec 17, 2024

Hook up hooks for recording job and workflow history

adamnovakpushed 3 commits to issues/5159-dockstore-metrics • 86d49fd…1bcb05d • 
on Dec 12, 2024

Record job start times since Dockstore needs them

adamnovakcreated issues/5159-dockstore-metrics • 86d49fd • 
on Dec 12, 2024

Fix typo

adamnovakcreated issues/4872-drop-wdl-files • f866fee • 
on Nov 14, 2024

Satisfy MyPy

adamnovakpushed 58 commits to issues/4797-shared-fs-caching • 03177ce…9a80836 • 
on Oct 14, 2024

Start porting over to ZIP download based TRS retrieval

Force push
adamnovakforce pushed to issues/5049-run-from-dockstore • 563fa56…35f5a60 • 
on Oct 7, 2024

Start porting over to ZIP download based TRS retrieval

adamnovakcreated issues/5049-run-from-dockstore • 563fa56 • 
on Oct 7, 2024

Start on helpers for working with MiniWDL's call cache

adamnovakcreated issues/4797-shared-fs-caching • 03177ce • 
on Aug 22, 2024

Add a test for whole-node CWL memory on Slurm

adamnovakcreated issues/4971-slurm-node-memory • ea1e3ea • 
on Aug 8, 2024

Allow WDL 1.0 workflows to use GPUs without the gpu key

adamnovakcreated issues/5033-relax-gpu-key-requirement • 52faf06 • 
on Jul 22, 2024

Put symlink passthrough test on skip list until DataBiosphere#5031 is…

adamnovakpushed 9 commits to issues/5009-wdl-glob-shell-order • 4531945…3a33aa2 • 
on Jul 22, 2024

Use WDL conformance tests that have a sensible input_override test

adamnovakcreated issues/5009-wdl-glob-shell-order • 4531945 • 
on Jul 19, 2024

Add hint machinery to kind of help the user move things

adamnovakpushed 1 commit to issues/4972-refuse-buggy-filesystems • d80cc8f…2e7830b • 
on Jul 18, 2024

Merge remote-tracking branch 'upstream/master' into issues/4972-refus…

adamnovakpushed 7 commits to issues/4972-refuse-buggy-filesystems • a14bc08…d80cc8f • 
on Jul 18, 2024

Sniff filesystem type and try not to use locks on Ceph

adamnovakcreated issues/4972-refuse-buggy-filesystems • a14bc08 • 
on Jul 1, 2024

Satisfy MyPy more (new MyPy?)

adamnovakcreated issues/3940-cwl-docs-clarification • 8a3d537 • 
on May 1, 2024

Satisfy MyPy more (new MyPy?)

adamnovakcreated bye_pytz • 0f736bb • 
on May 1, 2024

Fix lingering old import

Force push
adamnovakforce pushed to issues/4799-log-docker-cpu • bb2cada…4cff316 • 
on Mar 12, 2024

Fix linkering old import

adamnovakpushed 12 commits to issues/4799-log-docker-cpu • 6bc70b8…bb2cada • 
on Mar 11, 2024

Keep resource monitoring state in a class

adamnovakcreated issues/4799-log-docker-cpu • 6bc70b8 • 
on Mar 11, 2024

Use 3.8-compatible type hints

adamnovakcreated issues/4821-support-3.8 • 4c761d2 • 
on Mar 8, 2024

Preserve exit code from user code

adamnovakpushed 1 commit to issues/4801-request-slurm-signal • 914412a…b84167a • 
on Feb 16, 2024

Run worker orderly cleanup even if asked to stop

adamnovakpushed 1 commit to issues/4801-request-slurm-signal • 7d48d64…914412a • 
on Feb 16, 2024

Make the interrupt signal actually get to the worker process

adamnovakpushed 1 commit to issues/4801-request-slurm-signal • 11c49cd…7d48d64 • 
on Feb 16, 2024

Use SIGINT for Slurm timeouts instead of SIGTERM

adamnovakpushed 1 commit to issues/4801-request-slurm-signal • c559a72…11c49cd • 
on Feb 16, 2024

Add a Slurm termination signal for timeouts

adamnovakcreated issues/4801-request-slurm-signal • c559a72 • 
on Feb 16, 2024

Swap over to a stats example that is more illustrative

adamnovakpushed 11 commits to issues/4746-good-wdl-stats • ab2eed5…6bff8bf • 
on Feb 15, 2024