Commits

Breadcrumbs

History for

onmaster

User selector

All users

Datepicker

All time

Commit History

Commits on Nov 9, 2024

• Docs: actualized copyrights, citations and support email

  alexeigurevich

  committed
  bba02f7

  Copy full SHA for bba02f7

Commits on Jun 7, 2022

• metaquast: bugfix (critical): do not crash if nothing aligned to an explicitly specified reference (related to 9001e55)

  alexeigurevich

  committed
  e0c34b0

  Copy full SHA for e0c34b0

Commits on May 26, 2022

• cosmetic: Welcome 2022!

  alexeigurevich

  committed
  f5d7116

  Copy full SHA for f5d7116

Commits on Aug 17, 2021

• don’t hide explicitly specified reference genomes from the metaquast report (issue # 176)

  almiheenko

  committed
  9001e55

  Copy full SHA for 9001e55

Commits on Aug 13, 2021

• fix busco db download in metaquast

  almiheenko

  committed
  dbf5a3f

  Copy full SHA for dbf5a3f

Commits on Apr 29, 2020

• Happy New 2020 Year! (32.63% passed already..)

  alexeigurevich

  committed
  6260eff

  Copy full SHA for 6260eff

Commits on Apr 28, 2020

• MetaQuast: new option --reuse-combined-alignments for reusing alignments against the combined_reference in the subsequent runs_per_reference analysis stages

  alexeigurevich

  committed
  483a8e6

  Copy full SHA for 483a8e6

• qconfig: cosmetics

  alexeigurevich

  committed
  dfc0895

  Copy full SHA for dfc0895

Commits on Oct 28, 2019

• Switch from imp.reload (deprecated) to importlib.reload; see also 831331c

  alexeigurevich

  committed
  3d46489

  Copy full SHA for 3d46489

Commits on Feb 8, 2019

• Happy New 2019 Year!

  alexeigurevich

  committed
  01550ac

  Copy full SHA for 01550ac

• Defaults: use --min-idy 90 in all metaquast runs and 95 in quast runs

  alexeigurevich

  committed
  564efb2

  Copy full SHA for 564efb2

Commits on Oct 16, 2018

• Try to import joblib instead of joblib2/3

  almiheenko

  committed
  13d61ed

  Copy full SHA for 13d61ed

Commits on Jul 18, 2018

• MetaQUAST: fix for --scaffolds (when no references are provided)

  almiheenko

  committed
  b385864

  Copy full SHA for b385864

Commits on Jun 21, 2018

• Copyrights update (Happy [Australian] New Year!)

  alexeigurevich

  committed
  f1a094b

  Copy full SHA for f1a094b

Commits on Feb 9, 2018

• quast-lg.py added; corresponding changes in options parsing and help

  alexeigurevich

  committed
  6e2af56

  Copy full SHA for 6e2af56

Commits on Jan 23, 2018

• Fix -x/-m/-i priority over --large; set large extensive_misassembly_threshold to 7000

  almiheenko

  committed
  e42d541

  Copy full SHA for e42d541

Commits on Dec 4, 2017

• Fix checking metaquast assemblies; critical error if contigs contain non-ACGT characters;

  almiheenko

  committed
  d05831e

  Copy full SHA for d05831e

Commits on Oct 4, 2017

• Metaquast: fix number of threads for not aligned

  almiheenko

  committed
  009b380

  Copy full SHA for 009b380

Commits on Jul 14, 2017

• More unix philosophy in choosing between stderr/stdout for -v, -h, etc

  alexeigurevich

  committed
  9f849f4

  Copy full SHA for 9f849f4

Commits on Jul 4, 2017

• Mummer: no reference size limit

  almiheenko

  committed
  c164847

  Copy full SHA for c164847

Commits on Apr 4, 2017

• Added separate options for reference and assembly SAM/BAM files; changed reads analysis in metaquast

  almiheenko

  committed
  3c0a1ae

  Copy full SHA for 3c0a1ae

Commits on Mar 31, 2017

• Added busco (linux only)

  almiheenko

  committed
  0b33bce

  Copy full SHA for 0b33bce

Commits on Mar 29, 2017

• Reads stats: added --12 and --single options, added possibility to use paired-end + single-read libraries

  almiheenko

  committed
  7389a69

  Copy full SHA for 7389a69

• Added reads mapping stats

  almiheenko

  committed
  dbfd28c

  Copy full SHA for dbfd28c

Commits on Mar 16, 2017

• Added --use-input-ref-order option

  almiheenko

  committed
  ece4abf

  Copy full SHA for ece4abf

• Quast and MetaQuast: fatal error if reference is empty or incorrect (the only exception: ref is downloaded from NCBI)

  alexeigurevich

  committed
  aeb0fa9

  Copy full SHA for aeb0fa9

Commits on Mar 14, 2017

• --metagenemark -> --mgm

  almiheenko

  committed
  4a10fce

  Copy full SHA for 4a10fce

• Add gene finding step if --metagenemark option was specified

  almiheenko

  committed
  dff2c39

  Copy full SHA for dff2c39

Commits on Mar 11, 2017

• Print main parameters in certain order

  almiheenko

  committed
  a97bdb1

  Copy full SHA for a97bdb1

Commits on Mar 7, 2017

• Happy New Year (copyright update)

  alexeigurevich

  committed
  f72931b

  Copy full SHA for f72931b

Commits on Mar 2, 2017

• Fixed max Y in bar graph plots

  almiheenko

  committed
  26895ca

  Copy full SHA for 26895ca

Commits on Mar 1, 2017

• Metaquast logging fix

  almiheenko

  committed
  dcec162

  Copy full SHA for dcec162

Commits on Feb 28, 2017

• Rename --meta -> --metagenemark

  almiheenko

  committed
  5a376f8

  Copy full SHA for 5a376f8

• Parallel Metaquast per references

  almiheenko

  committed
  e3bdf0f

  Copy full SHA for e3bdf0f

Commits on Feb 17, 2017

• Metaquast: show all references in summary plots

  almiheenko

  committed
  ad25040

  Copy full SHA for ad25040

Pagination

Previous

Next