- Cape Town, South Africa
- abhi18av.com
- https://orcid.org/0000-0002-6402-6993
- @abhi18av
Highlights
- Pro
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nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
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pathogen-profiler Public
Forked from jodyphelan/pathogen-profilerThis repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data
Python GNU Lesser General Public License v3.0 UpdatedMar 26, 2024 -
TBProfiler Public
Forked from jodyphelan/TBProfilerProfiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Python GNU General Public License v3.0 UpdatedMar 17, 2024 -
nf-nomad Public
Forked from nextflow-io/nf-nomad[WIP] Hashicorp Nomad executor plugin for Nextflow
Groovy Apache License 2.0 UpdatedFeb 7, 2024 -
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nf-plugins Public
Forked from nextflow-io/pluginsNextflow plugins index repository
UpdatedOct 18, 2023 -
wave Public
Forked from seqeralabs/waveOn-demand containers provisioning service
Groovy GNU Affero General Public License v3.0 UpdatedOct 17, 2023 -
awesome-stars Public
Forked from angristan/awesome-starsA curated list of my GitHub stars!
UpdatedJul 13, 2023 -
fetchngs Public
Forked from nf-core/fetchngsPipeline to fetch metadata and raw FastQ files from public and private databases
Groovy MIT License UpdatedJul 5, 2023 -
samplesheetgen-clj Public
A Babashka (Clojure) utility for generating samplesheets for different platforms from a base samplesheet
Clojure UpdatedJul 3, 2023 -
methylseq Public
Forked from nf-core/methylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Nextflow MIT License UpdatedJun 30, 2023 -
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 22, 2023 -
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MTBseq_source Public
Forked from ngs-fzb/MTBseq_sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…
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blog-en Public
Forked from beatrizmilz/blog-enMy quarto blog (thanks to Bea Milz!)
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emilyncosta.com Public
Forked from emilyncosta/ECCS_websiteMy Blog and CV
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nf-biojava Public
Forked from jorgeaguileraseqera/nf-biojavaa nextflow plugin to integrate BioJava
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nf-core-tower-azure-poc Public
Forked from seqeralabs/nf-core-tower-azure-poc -
nextflow-vim Public
Forked from Mxrcon/nextflow-vimNextflow plugin for VIM
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h3agwas Public
Forked from h3abionet/h3agwasGWAS Pipeline for H3Africa
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bionitio-clojure Public
Forked from bionitio-team/bionitio-clojureDemonstrating best practices for bioinformatics command line tools
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rnaseq-nf Public
Forked from nextflow-io/rnaseq-nfA proof of concept of RNAseq pipeline
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multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
1 UpdatedFeb 11, 2022