diff --git a/.github/workflows/pyodide.yml b/.github/workflows/pyodide.yml
index 2361e3a74e8..8b5c6ebd159 100644
--- a/.github/workflows/pyodide.yml
+++ b/.github/workflows/pyodide.yml
@@ -43,9 +43,9 @@ jobs:
cd src/api/python
CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" CXXFLAG="${CXXFLAGS}" ~/env/bin/pyodide build --exports whole_archive
env:
- CFLAGS: "-fexceptions -s DISABLE_EXCEPTION_CATCHING=0 -pthread -s USE_PTHREADS=1 -g2 -s SAFE_HEAP=0 -s PTHREAD_POOL_SIZE=0 -s PTHREAD_POOL_SIZE_STRICT=0 -latomic"
- LDFLAGS: "-fexceptions -s WASM_BIGINT -s -pthread -s USE_PTHREADS=1 -latomic"
- CXXFLAGS: "-fexceptions -pthread -s USE_PTHREADS=1 -s DISABLE_EXCEPTION_CATCHING=0 -latomic"
+ CFLAGS: "-fexceptions -s DISABLE_EXCEPTION_CATCHING=0 -s USE_PTHREADS=1 -g2 -s SAFE_HEAP=0 -s PTHREAD_POOL_SIZE=0 -s PTHREAD_POOL_SIZE_STRICT=0"
+ LDFLAGS: "-fexceptions -s WASM_BIGINT -s -s USE_PTHREADS=1"
+ CXXFLAGS: "-fexceptions -s USE_PTHREADS=1 -s DISABLE_EXCEPTION_CATCHING=0"
- name: Setup env-pyodide
run: |