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Update README.md #13

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Oct 20, 2021
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Update README.md #13

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Update README.md
maloneytc Oct 20, 2021
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Merge branch 'master' into patch-1
brudfors Oct 20, 2021
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7 changes: 6 additions & 1 deletion README.md
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Expand Up @@ -44,7 +44,12 @@ docker build -t ubuntu:ctseg -f CTseg/Dockerfile .
CTseg can then be run, for example, by:

```bash
docker run --rm -it -v dir_host:/data ubuntu:ctseg function spm_CTseg /data/CT.nii
docker run --rm -it -v dir_host:/data ubuntu:ctseg function spm_CTseg '/data/CT.nii'
```
or

```bash
docker run --rm -it -v dir_host:/data ubuntu:ctseg eval "spm_CTseg('/data/CT.nii')"
```

where `dir_host` is the absolute path to a folder on your local machine that contains a `CT.nii` image. After CTseg has finished running, its output can be found in the `dir_host` folder.
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