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Commits on Jun 27, 2024

• revert changes

  bedroesb

  authoredJun 27, 2024
  24b148a

• Update push_container.yml

  bedroesb

  authoredJun 27, 2024
  f92d545

Commits on Apr 2, 2024

• Add support for Read the Docs v2 (#60)

  Cecilia-Sensalari

  authoredApr 2, 2024
  c3d1bc6

Commits on Mar 29, 2024

• Fix version number in __version__ (#58)

  Cecilia-Sensalari

  authoredMar 29, 2024
  ef6570a

Commits on Jun 1, 2023

• Bugfix for exponential-lognormal mixture model: remove weight rounding during EM iterations (#50)

  Cecilia-Sensalari

  authoredJun 1, 2023
  fd8aff4

Commits on May 10, 2023

• Add BibTex citation format

  Cecilia-Sensalari

  committedMay 10, 2023
  0d049d4

• Add warning for negative distances during rate-adjustment (#49)

  Cecilia-Sensalari

  authoredMay 10, 2023
  46297d7

Commits on Feb 21, 2023

• Update citation line in docs

  Cecilia-Sensalari

  committedFeb 21, 2023
  1b63ef0

Commits on Feb 16, 2023

• Docs: fix gff_filename in configuration.rst

  Cecilia-Sensalari

  committedFeb 16, 2023
  0cd284d

Commits on Jan 18, 2023

• Avoid exiting due to i-ADHoRe warnings (#46)

  Cecilia-Sensalari

  authoredJan 18, 2023
  27b0ea9

Commits on Jul 13, 2022

• Add support for Nextflow version 22.03.0-edge and later (#43)

  Cecilia-Sensalari

  authoredJul 13, 2022
  fd25a7b

Commits on Mar 24, 2022

• User-defined filename/path for expert config file (#37)

  Cecilia-Sensalari

  authoredMar 24, 2022
  bfbb623

Commits on Mar 23, 2022

• Improve checkpoint for divergence colors provided in configuration file (#36)

  Cecilia-Sensalari

  authoredMar 23, 2022
  621191f

• Check Newick tree structural integrity (#35)

  Cecilia-Sensalari

  authoredMar 23, 2022
  bc9ea47

Commits on Mar 17, 2022

• Delete preprint directory

  Cecilia-Sensalari

  committedMar 17, 2022
  b1b1d9c

Commits on Mar 14, 2022

• Fix test GitHub action (#34)

  Cecilia-Sensalari

  authoredMar 14, 2022
  6c4f4a0

• Informal species names must be without underscore

  Cecilia-Sensalari

  committedMar 14, 2022
  a4d96b1

Commits on Oct 29, 2021

• Add CITATION.cff (#33)

  Cecilia-Sensalari

  authoredOct 29, 2021
  75fc0de

Commits on Oct 28, 2021

• Update requirement.txt with module versions (#32)

  Cecilia-Sensalari

  authoredOct 28, 2021
  ce1c457

• Bugfix for importing version in conf.py

  Cecilia-Sensalari

  committedOct 28, 2021
  525dcbb

• Update push GitHub action to support ARM (#31)

  Cecilia-Sensalari

  authoredOct 28, 2021
  cae2247

• Automate version update (#29)

  Cecilia-Sensalari

  authoredOct 28, 2021
  10e8e83

Commits on Oct 6, 2021

• Fix: "plot-paralogs" command generates directory if needed (#28)

  Cecilia-Sensalari

  authoredOct 6, 2021
  d9743f2

• Rename "correction" to "adjustment" in doc-strings and logging (#27)

  Cecilia-Sensalari

  authoredOct 6, 2021
  b9c4d59

Commits on Aug 26, 2021

• Improve installation documentation

  Cecilia-Sensalari

  committedAug 26, 2021
  3ef677c

• Update some sections in installation.rst

  lohausr

  committedAug 26, 2021
  183d1f0

Commits on Aug 25, 2021

• Change structure of installation.rst

  Cecilia-Sensalari

  committedAug 25, 2021
  55a58e0

Commits on Aug 24, 2021

• Update README.md

  lohausr

  authoredAug 24, 2021
  728b08c

• Clarify Singularity version and links and minor edits

  lohausr

  committedAug 24, 2021
  41cede5

• Add "Update installation" to installation.rst

  Cecilia-Sensalari

  committedAug 24, 2021
  9ffc409

• Update README.md

  lohausr

  authoredAug 24, 2021
  7c40553

• Clarify Java versions required

  lohausr

  committedAug 24, 2021
  6649a54

Commits on Aug 23, 2021

• Update README.md

  lohausr

  authoredAug 23, 2021
  a6c6bf8

• Improve some installation links and instructions

  lohausr

  committedAug 23, 2021
  9b9a4cb

• Update README.md

  lohausr

  authoredAug 23, 2021
  e26b011

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