From c5f93160a724570107b6dc35d4489ea76029a5c0 Mon Sep 17 00:00:00 2001 From: lohausr <56632794+lohausr@users.noreply.github.com> Date: Mon, 1 Mar 2021 00:28:00 +0100 Subject: [PATCH] Update README.md --- README.md | 15 +++++++-------- 1 file changed, 7 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 076feff..6e25c9b 100644 --- a/README.md +++ b/README.md @@ -3,10 +3,10 @@ [![Documentation Status](https://readthedocs.org/projects/ksrates/badge/?version=latest)](https://ksrates.readthedocs.io/en/latest/?badge=latest) -VIB-UGent Center for Plant Systems Biology---[Evolutionary Systems Biology Lab](http://www.psb.ugent.be/esb) +VIB-UGent Center for Plant Systems Biology—[Evolutionary Systems Biology Lab](http://www.psb.ugent.be/esb) # ksrates -*ksrates* is a tool to position whole-genome duplications\* (WGDs) relative to speciation events using substitution-rate-adjusted mixed paralog--ortholog distributions of synonymous substitutions per synonymous site (*K*S). +*ksrates* is a tool to position whole-genome duplications\* (WGDs) relative to speciation events using substitution-rate-adjusted mixed paralog–ortholog distributions of synonymous substitutions per synonymous site (*K*S). \* or, more generally, whole-genome multiplications (WGMs), but we will simply use the more common WGD to refer to any multiplication @@ -18,8 +18,8 @@ To position ancient WGD events with respect to speciation events in a phylogeny, For more details, see: -[Documentation](https://ksrates.readthedocs.io/) -[Tutorial](https://ksrates.readthedocs.io/en/latest/usage.html) +[Documentation](https://ksrates.readthedocs.io/)\ +[Tutorial](https://ksrates.readthedocs.io/en/latest/usage.html)\ [FAQ](https://ksrates.readthedocs.io/en/latest/faqs.html) ## Quick start @@ -68,12 +68,11 @@ See the Usage sections below and the [Tutorial](https://ksrates.readthedocs.io/e We briefly illustrate here how to run the *ksrates* Nextflow pipeline on the `test` dataset. 1. Get the example datasets. - * Clone the repository to get the test datasets: - - + 1. Clone the repository to get the test datasets: + git clone https://github.com/VIB-PSB/ksrates - * You may want to copy the dataset folder you want to use to another location, for example your home folder, and then change to that folder: + 2. You may want to copy the dataset folder you want to use to another location, for example your home folder, and then change to that folder: mv ksrates/test ~ cd ~/test