From c5f93160a724570107b6dc35d4489ea76029a5c0 Mon Sep 17 00:00:00 2001
From: lohausr <56632794+lohausr@users.noreply.github.com>
Date: Mon, 1 Mar 2021 00:28:00 +0100
Subject: [PATCH] Update README.md
---
README.md | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/README.md b/README.md
index 076feff..6e25c9b 100644
--- a/README.md
+++ b/README.md
@@ -3,10 +3,10 @@
[![Documentation Status](https://readthedocs.org/projects/ksrates/badge/?version=latest)](https://ksrates.readthedocs.io/en/latest/?badge=latest)
-VIB-UGent Center for Plant Systems Biology---[Evolutionary Systems Biology Lab](http://www.psb.ugent.be/esb)
+VIB-UGent Center for Plant Systems Biology—[Evolutionary Systems Biology Lab](http://www.psb.ugent.be/esb)
# ksrates
-*ksrates* is a tool to position whole-genome duplications\* (WGDs) relative to speciation events using substitution-rate-adjusted mixed paralog--ortholog distributions of synonymous substitutions per synonymous site (*K*S).
+*ksrates* is a tool to position whole-genome duplications\* (WGDs) relative to speciation events using substitution-rate-adjusted mixed paralog–ortholog distributions of synonymous substitutions per synonymous site (*K*S).
\* or, more generally, whole-genome multiplications (WGMs), but we will simply use the more common WGD to refer to any multiplication
@@ -18,8 +18,8 @@ To position ancient WGD events with respect to speciation events in a phylogeny,
For more details, see:
-[Documentation](https://ksrates.readthedocs.io/)
-[Tutorial](https://ksrates.readthedocs.io/en/latest/usage.html)
+[Documentation](https://ksrates.readthedocs.io/)\
+[Tutorial](https://ksrates.readthedocs.io/en/latest/usage.html)\
[FAQ](https://ksrates.readthedocs.io/en/latest/faqs.html)
## Quick start
@@ -68,12 +68,11 @@ See the Usage sections below and the [Tutorial](https://ksrates.readthedocs.io/e
We briefly illustrate here how to run the *ksrates* Nextflow pipeline on the `test` dataset.
1. Get the example datasets.
- * Clone the repository to get the test datasets:
-
-
+ 1. Clone the repository to get the test datasets:
+
git clone https://github.com/VIB-PSB/ksrates
- * You may want to copy the dataset folder you want to use to another location, for example your home folder, and then change to that folder:
+ 2. You may want to copy the dataset folder you want to use to another location, for example your home folder, and then change to that folder:
mv ksrates/test ~
cd ~/test