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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 288 45

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 90 11

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 54 3

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 47 1

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 43 5

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 26 3

Repositories

Showing 10 of 65 repositories
  • Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Teichlab/Genes2Genes’s past year of commit activity
    Jupyter Notebook 43 MIT 5 1 2 Updated Oct 14, 2024
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Teichlab/snp2cell’s past year of commit activity
    Python 6 BSD-3-Clause 0 0 0 Updated Oct 13, 2024
  • vascular_atlas Public

    Repo with analysis code for the vascular atlas paper

    Teichlab/vascular_atlas’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 11, 2024
  • TissueTag Public

    Python package to interactively annotate histological images within a jupyter notebook

    Teichlab/TissueTag’s past year of commit activity
    Jupyter Notebook 8 BSD-3-Clause 3 1 0 Updated Oct 11, 2024
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 10, 2024
  • thymus_spatial_atlas Public

    general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

    Teichlab/thymus_spatial_atlas’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Oct 8, 2024
  • G2G_notebooks Public

    Analysis notebooks for G2G MS

    Teichlab/G2G_notebooks’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Oct 7, 2024
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Jupyter Notebook 47 MIT 1 5 0 Updated Oct 4, 2024
  • sctk Public
    Teichlab/sctk’s past year of commit activity
    Python 21 GPL-3.0 4 1 1 Updated Sep 27, 2024
  • cell2tcr Public

    Inference of TCR motifs

    Teichlab/cell2tcr’s past year of commit activity
    Jupyter Notebook 26 3 1 0 Updated Sep 24, 2024
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