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Update README.md
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TangYiChing authored Nov 4, 2020
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Expand Up @@ -16,7 +16,7 @@ Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores
python FNN.py -i inputs.txt -o ./output_prefix
```
# Data preprocessing
Pathway enrichment scores for categorical data (i.e., mutation, copy number variation, and drug targets) were obtained by the NetPEA algorithm, which is available at: https://github.com/TangYiChing/NetPEA, while pathway enrichment scores for numeric data (i.e., gene expression) was obtained by the gseapy tool (https://gseapy.readthedocs.io/en/master/gseapy_example.html).
Pathway enrichment scores for categorical data (i.e., mutation, copy number variation, and drug targets) were obtained by running the NetPEA algorithm, which is available at: https://github.com/TangYiChing/NetPEA, while pathway enrichment scores for numeric data (i.e., gene expression) was generated by the gseapy tool (https://gseapy.readthedocs.io/en/master/gseapy_example.html).

step1. performe

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