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Commits on Jul 31, 2024

• Structural variants v2 - accommodate transposable elements (#209)

  Show description for 2583e28
  

  3 peopleauthored
  2583e28

Commits on Jul 13, 2024

• remove unused script

  abhi18av

  committed
  241f665

• accommodate missing field values in samplesheet

  abhi18av

  committed
  e6c9f17

Commits on Jul 8, 2024

• Rename the threshold variables [ci skip]

  abhi18av

  committed
  2be9944

• Merge branch 'develop' into fastq-stats

  abhi18av

  committed
  0e05cd2

Commits on Jul 1, 2024

• Improve strand bias filter for minor/infrequent variants (#202)

  Show description for 333580b
  

  abhi18av

  and

  TimHHH

  authored
  333580b

Commits on Jun 23, 2024

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  5744194

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  39b28af

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  788e77d

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  fd2082c

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  17c3216

• accomodate the sample maps [ci skip]

  abhi18av

  committed
  4234d08

• escape the bam string

  abhi18av

  committed
  d399c71

• accomodate the sample maps [ci skip]

  abhi18av

  committed
  7b989e9

• move all computations to samplesheet validation

  abhi18av

  committed
  c99cf80

• improve partial workflows [ci skip]

  abhi18av

  committed
  7dd1f74

• improve partial workflows [ci skip]

  abhi18av

  committed
  b935da2

• improve partial workflows [ci skip]

  abhi18av

  committed
  6644d13

• improve partial workflows [ci skip]

  abhi18av

  committed
  b681e79

• dev iteration [ci skip]

  abhi18av

  committed
  e0ee3ac

Commits on Jun 22, 2024

• dev iteration [ci skip]

  abhi18av

  committed
  2955c8f

• dev iteration [ci skip]

  abhi18av

  committed
  f11fc7f

• dev iteration [ci skip]

  abhi18av

  committed
  5bce654

• dev iteration [ci skip]

  abhi18av

  committed
  444b845

• dev iteration

  abhi18av

  committed
  2c69432

• iterate on fastq_validation

  abhi18av

  committed
  c4ec1d9

• dev iteration on the idea of magma_dict

  abhi18av

  committed
  3407c2f

• iterate to unify the fastq validation and stats

  abhi18av

  committed
  3d63947

• publish fastq stats by default (for now)

  abhi18av

  committed
  af0b380

• implement an initial python script

  abhi18av

  committed
  bdef346

Commits on Jun 19, 2024

• weed out some code

  abhi18av

  committed
  32071b3

• dev iteration

  abhi18av

  committed
  da83561

Commits on Jun 18, 2024

• finalized the script for strand bias

  abhi18av

  committed
  508d9ff

• update variable names

  abhi18av

  committed
  9271829

Commits on Jun 17, 2024

• add CLI interface to the script

  abhi18av

  committed
  c684702

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