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Commits on Jul 31, 2024

• Structural variants v2 - accommodate transposable elements (#209)

  Show description for 2583e28
  

  3 peopleauthored
  2583e28

• Merge pull request #213 from TORCH-Consortium/feature/bqsr-and-vqsr-files

  Show description for e77ec15
  abhi18av

  authored
  e77ec15

• add note for bqsr files and rename them [ci skip]

  abhi18av

  committed
  5910a74

Commits on Jul 23, 2024

• add a singularity profile

  abhi18av

  committed
  99d334a

• fix the docker def for misc container

  abhi18av

  committed
  55e2922

• Update default_params.config

  Show description for 74da93b
  vrennie

  authored
  74da93b

Commits on Jul 22, 2024

• tweak comments

  abhi18av

  committed
  4c5aa27

• tweak the output dir structure as per DR tools used

  abhi18av

  committed
  3cd43c9

• Merge pull request #197 from TORCH-Consortium/tb-profiler-itol

  Show description for f834d26
  abhi18av

  authored
  f834d26

Commits on Jul 21, 2024

• Merge branch 'master' into tb-profiler-itol

  abhi18av

  committed
  a0e54af

• minimize the changes for testing

  abhi18av

  committed
  2a30db5

Commits on Jul 13, 2024

• Merge pull request #205 from TORCH-Consortium/fastq-stats

  Show description for db87072
  abhi18av

  authored
  db87072

• remove unused script

  abhi18av

  committed
  241f665

• accommodate missing field values in samplesheet

  abhi18av

  committed
  e6c9f17

• tweak the deletion of intermediate files

  abhi18av

  committed
  18eac9a

• save intermediate du_md5sum stats

  abhi18av

  committed
  294e350

• fix

  abhi18av

  committed
  1f9ae3d

Commits on Jul 8, 2024

• Rename the threshold variables [ci skip]

  abhi18av

  committed
  2be9944

• Simplify the samplesheet (#204)

  Show description for cac19d9
  abhi18av

  authored
  cac19d9

• Merge branch 'develop' into fastq-stats

  abhi18av

  committed
  0e05cd2

Commits on Jul 1, 2024

• Improve strand bias filter for minor/infrequent variants (#202)

  Show description for 333580b
  

  abhi18av

  and

  TimHHH

  authored
  333580b

• update default retry policy [ci skip]

  abhi18av

  committed
  35f1a97

Commits on Jun 30, 2024

• remove unused workflow file

  abhi18av

  committed
  ee99975

Commits on Jun 28, 2024

• Update default_params.config

  Show description for 927ea6b
  vrennie

  authored
  927ea6b

Commits on Jun 25, 2024

• dev iteration

  abhi18av

  committed
  6d15a48

Commits on Jun 23, 2024

• accomodate the sample maps [ci skip]

  abhi18av

  committed
  43c012a

• accomodate the sample maps [ci skip]

  abhi18av

  committed
  025ab76

• accomodate the sample maps [ci skip]

  abhi18av

  committed
  b2604bf

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  d1a8ed5

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  3eb05c0

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  4f418eb

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  68ff034

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  ae79178

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  94b0979

• reconnect to the overall workflow [ci skip]

  abhi18av

  committed
  cf61c60

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