comment structural variation [ci skip]

TORCH-Consortium · Jul 31, 2023 · 6d7d98f · 6d7d98f
1 parent 38db797
commit 6d7d98f
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -38,7 +38,7 @@ workflow {
 
         MINOR_VARIANTS_ANALYSIS_WF(CALL_WF.out.reformatted_lofreq_vcfs_tuple_ch)
 
-        STRUCTURAL_VARIANTS_ANALYSIS_WF ( CALL_WF.out.samtools_bam_ch )
+        //STRUCTURAL_VARIANTS_ANALYSIS_WF ( CALL_WF.out.samtools_bam_ch )
 
         UTILS_MERGE_COHORT_STATS ( MINOR_VARIANTS_ANALYSIS_WF.out.approved_samples_ch,
                                    MINOR_VARIANTS_ANALYSIS_WF.out.rejected_samples_ch,
@@ -60,6 +60,8 @@ workflow {
 
         CALL_WF( MAP_WF.out.sorted_reads_ch )
 
+        //STRUCTURAL_VARIANTS_ANALYSIS_WF ( CALL_WF.out.samtools_bam_ch )
+
         //NOTE: Samples implicitly get filtered in BCFTOOLS_MERGE if they don't have any identified variants
         MINOR_VARIANTS_ANALYSIS_WF(CALL_WF.out.reformatted_lofreq_vcfs_tuple_ch)