When SkyTemple reloads the ROM, it always returns to the default starting position, such that the user then needs to manually navigate to where they were in SkyTemple's menus before the reload happened.
This can be cumbersome when performing many operations that require reloading, such as installing a lot of patches, so it would be convenient if SkyTemple remembered where the user was before the reload and navigated to there automatically after a reload (in particular, an obligatory "The ROM will now be reloaded" reload).