Specify empty types

PathoGenOmics-Lab · Apr 17, 2024 · 801df54 · 801df54
1 parent 1a456f7
commit 801df54
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/workflow/scripts/report/NV_description.R b/workflow/scripts/report/NV_description.R
@@ -55,14 +55,14 @@ date_order <- metadata %>%
 
 empty_vcf <- tibble(
   REGION      = date_order,
-  variant     = NA,
-  ALT_FREQ    = NA,
-  GFF_FEATURE = NA,
-  synonimous  = NA,
-  POS         = NA,
-  ALT         = NA,
-  NV_class    = NA,
-  group       = NA
+  variant     = as.character(NA),
+  ALT_FREQ    = as.numeric(NA),
+  GFF_FEATURE = as.character(NA),
+  synonimous  = as.character(NA),
+  POS         = as.numeric(NA),
+  ALT         = as.character(NA),
+  NV_class    = as.character(NA),
+  group       = as.character(NA)
 )
 
 # Create SNP variable and select useful variables