A repository for electronics and hardware design files for a single-cell electroporation rig.

Scientific Inkscape: Inkscape extensions for figure resizing and editing

A deep learning framework for synaptic event detection

Hennestad et al. 2022

Astrocytes Semantic Segmentation

A tool for manually track neurons across days

Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

Simple function that loads example neural data from rat hippocampal dorsal CA1 and plots it for data exploration

Open-source stereotaxic coordinator

An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data

A deep-learning-based web tool for translational and real-time pupillometry

2P cell attached recording pipeline

Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)

Particle Image Velocimetry for Matlab, official repository

A simple Python implementation of the Hodgkin-Huxley spiking neuron model

Open Source Theremin Instrument, Arudino Codes

Finite volume solver for incompressible multiphase flows with surface tension. Foaming flows in complex geometries.

Creates movies using FFMPEG from Matplotlib plots or custom images

matlab fuction for reading abf files including v2.0 files

Matlab function for import of Axograph X files into a streamlined Matlab format.

Data Analysis with Bootstrapped ESTimation

Laser scanning microscope acquisition software

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans