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NEWS
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CHANGES IN VERSION 1.0.5
------------------------
o Improved the installation guidelines from GitHub
o Vignette now in Markdown for a better integration in GitHub
o Added the normalizationMethod parameter to the edgeR pipeline to allow a RLE or upperquartile normalization
CHANGES IN VERSION 1.0.4
------------------------
o Order counts according to features names in loadCountData()
o Small modifications in the DESeq2 report due to the changes in version 1.0.3
CHANGES IN VERSION 1.0.3
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o If use of DESeq2, the cooksCutoff parameter is now TRUE or FALSE (instead of NULL, Inf or a numeric)
CHANGES IN VERSION 1.0.2
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o Added volcano plots to the HTML reports
CHANGES IN VERSION 1.0.0
------------------------
o First version publicly available on GitHub
CHANGES IN VERSION 0.99.6
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o Added batch argument to loadTargetFile()
o Simplified the R script templates with wrappers
CHANGES IN VERSION 0.99.5
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o Now check the format/validity of the parameters at the beginning of the script
o Added functions checkParameters.DESeq2() and checkParameters.edgeR()
o Added small precisions in the vignette
CHANGES IN VERSION 0.99.4
-------------------------
o First version of the package