Changed name record to r in subset_seqs

MG-RAST · Feb 20, 2019 · 82fe9b4 · 82fe9b4
1 parent 1844de8
commit 82fe9b4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/seqUtil b/bin/seqUtil
@@ -221,7 +221,7 @@ def subset_seqs(fasta_input, list, output, check, minimum):
     output_handle = open(output, "w")
     current = list_handle.readline()[:-1]
     for r in SeqIO.parse(fasta_handle, "fasta"):
-        if len(record.seq) < minimum:
+        if len(r.seq) < minimum:
             continue
         if check:
             if cmp(r.id, current) == 0: