Update MultiQC header files

IanKouzel · Jul 1, 2020 · 5e77dd9 · 5e77dd9
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Showing 10 changed files with 20 additions and 20 deletions.
diff --git a/assets/multiqc/mlib_deseq2_clustering_header.txt b/assets/multiqc/mlib_deseq2_clustering_header.txt
@@ -1,11 +1,11 @@
 #id: 'mlib_deseq2_clustering'
-#section_name: 'DESeq2: Sample similarity (merged library)'
+#section_name: 'MERGED LIB: DESeq2 sample similarity'
 #description: "is generated from clustering by Euclidean distances between
 #	       <a href='https://bioconductor.org/packages/release/bioc/html/DESeq2.html' target='_blank'>DESeq2</a>
 #              rlog values for each sample
 #              in the <a href='https://github.com/nf-core/atacseq/blob/master/bin/featurecounts_deseq2.r'><code>featurecounts_deseq2.r</code></a> script."
 #plot_type: 'heatmap'
-#anchor: 'nfcore_atacseq-mlib_deseq2_clustering'
+#anchor: 'mlib_deseq2_clustering'
 #pconfig:
 #    title: 'DESeq2: Heatmap of the sample-to-sample distances'
 #    xlab: True

diff --git a/assets/multiqc/mlib_deseq2_pca_header.txt b/assets/multiqc/mlib_deseq2_pca_header.txt
@@ -1,10 +1,10 @@
 #id: 'mlib_deseq2_pca'
-#section_name: 'DESeq2: PCA plot (merged library)'
+#section_name: 'MERGED LIB: DESeq2 PCA plot'
 #description: "PCA plot between samples in the experiment.
 #              These values are calculated using <a href='https://bioconductor.org/packages/release/bioc/html/DESeq2.html'>DESeq2</a>
 #              in the <a href='https://github.com/nf-core/atacseq/blob/master/bin/featurecounts_deseq2.r'><code>featurecounts_deseq2.r</code></a> script."
 #plot_type: 'scatter'
-#anchor: 'nfcore_atacseq-mlib_deseq2_pca'
+#anchor: 'mlib_deseq2_pca'
 #pconfig:
 #    title: 'DESeq2: Principal component plot'
 #    xlab: PC1

diff --git a/assets/multiqc/mlib_frip_score_header.txt b/assets/multiqc/mlib_frip_score_header.txt
@@ -1,10 +1,10 @@
 #id: 'mlib_frip_score'
-#section_name: 'MACS2: Peak FRiP score (merged library)'
+#section_name: 'MERGED LIB: MACS2 peak FRiP score'
 #description: "is generated by calculating the fraction of all mapped reads that fall
 #              into the MACS2 called peak regions. A read must overlap a peak by at least 20% to be counted.
 #              See <a href='https://www.encodeproject.org/data-standards/terms/' target='_blank'>FRiP score</a>."
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mlib_frip_score'
+#anchor: 'mlib_frip_score'
 #pconfig:
 #    title: 'FRiP score'
 #    ylab: 'FRiP score'

diff --git a/assets/multiqc/mlib_peak_annotation_header.txt b/assets/multiqc/mlib_peak_annotation_header.txt
@@ -1,9 +1,9 @@
 #id: 'mlib_peak_annotation'
-#section_name: 'HOMER: Peak annotation (merged library)'
+#section_name: 'MERGED LIB: HOMER peak annotation'
 #description: "is generated by calculating the proportion of peaks assigned to genomic features by
 #              <a href='http://homer.ucsd.edu/homer/ngs/annotation.html' target='_blank'>HOMER annotatePeaks.pl</a>."
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mlib_peak_annotation'
+#anchor: 'mlib_peak_annotation'
 #pconfig:
 #    title: 'Peak to feature proportion'
 #    ylab: 'Peak count'
diff --git a/assets/multiqc/mlib_peak_count_header.txt b/assets/multiqc/mlib_peak_count_header.txt
@@ -1,9 +1,9 @@
 #id: 'mlib_peak_count'
-#section_name: 'MACS2: Peak count (merged library)'
+#section_name: 'MERGED LIB: MACS2 peak count'
 #description: "is calculated from total number of peaks called by
 #	       <a href='https://github.com/taoliu/MACS' target='_blank'>MACS2</a>"
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mlib_peak_count'
+#anchor: 'mlib_peak_count'
 #pconfig:
 #    title: 'Total peak count'
 #    ylab: 'Peak count'
diff --git a/assets/multiqc/mrep_deseq2_clustering_header.txt b/assets/multiqc/mrep_deseq2_clustering_header.txt
@@ -1,11 +1,11 @@
 #id: 'mrep_deseq2_clustering'
-#section_name: 'DESeq2: Sample similarity (merged replicate)'
+#section_name: 'MERGED REP: DESeq2 sample similarity'
 #description: "is generated from clustering by Euclidean distances between
 #	       <a href='https://bioconductor.org/packages/release/bioc/html/DESeq2.html' target='_blank'>DESeq2</a>
 #              rlog values for each sample
 #              in the <a href='https://github.com/nf-core/atacseq/blob/master/bin/featurecounts_deseq2.r'><code>featurecounts_deseq2.r</code></a> script."
 #plot_type: 'heatmap'
-#anchor: 'nfcore_atacseq-mrep_deseq2_clustering'
+#anchor: 'mrep_deseq2_clustering'
 #pconfig:
 #    title: 'DESeq2: Heatmap of the sample-to-sample distances'
 #    xlab: True

diff --git a/assets/multiqc/mrep_deseq2_pca_header.txt b/assets/multiqc/mrep_deseq2_pca_header.txt
@@ -1,10 +1,10 @@
 #id: 'mrep_deseq2_pca'
-#section_name: 'DESeq2: PCA plot (merged replicate)'
+#section_name: 'MERGED REP: DESeq2 PCA plot'
 #description: "PCA plot between samples in the experiment.
 #              These values are calculated using <a href='https://bioconductor.org/packages/release/bioc/html/DESeq2.html'>DESeq2</a>
 #              in the <a href='https://github.com/nf-core/atacseq/blob/master/bin/featurecounts_deseq2.r'><code>featurecounts_deseq2.r</code></a> script."
 #plot_type: 'scatter'
-#anchor: 'nfcore_atacseq-mrep_deseq2_pca'
+#anchor: 'mrep_deseq2_pca'
 #pconfig:
 #    title: 'DESeq2: Principal component plot'
 #    xlab: PC1

diff --git a/assets/multiqc/mrep_frip_score_header.txt b/assets/multiqc/mrep_frip_score_header.txt
@@ -1,10 +1,10 @@
 #id: 'mrep_frip_score'
-#section_name: 'MACS2: Peak FRiP score (merged replicate)'
+#section_name: 'MERGED REP: MACS2 peak FRiP score'
 #description: "is generated by calculating the fraction of all mapped reads that fall
 #              into the MACS2 called peak regions. A read must overlap a peak by at least 20% to be counted.
 #              See <a href='https://www.encodeproject.org/data-standards/terms/' target='_blank'>FRiP score</a>."
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mrep_frip_score'
+#anchor: 'mrep_frip_score'
 #pconfig:
 #    title: 'FRiP score'
 #    ylab: 'FRiP score'

diff --git a/assets/multiqc/mrep_peak_annotation_header.txt b/assets/multiqc/mrep_peak_annotation_header.txt
@@ -1,9 +1,9 @@
 #id: 'mrep_peak_annotation'
-#section_name: 'HOMER: Peak annotation (merged replicate)'
+#section_name: 'MERGED REP: HOMER peak annotation'
 #description: "is generated by calculating the proportion of peaks assigned to genomic features by
 #              <a href='http://homer.ucsd.edu/homer/ngs/annotation.html' target='_blank'>HOMER annotatePeaks.pl</a>."
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mrep_peak_annotation'
+#anchor: 'mrep_peak_annotation'
 #pconfig:
 #    title: 'Peak to feature proportion'
 #    ylab: 'Peak count'
diff --git a/assets/multiqc/mrep_peak_count_header.txt b/assets/multiqc/mrep_peak_count_header.txt
@@ -1,9 +1,9 @@
 #id: 'mrep_peak_count'
-#section_name: 'MACS2: Peak count (merged replicate)'
+#section_name: 'MERGED REP: MACS2 Peak count'
 #description: "is calculated from total number of peaks called by
 #	       <a href='https://github.com/taoliu/MACS' target='_blank'>MACS2</a>"
 #plot_type: 'bargraph'
-#anchor: 'nfcore_atacseq-mrep_peak_count'
+#anchor: 'mrep_peak_count'
 #pconfig:
 #    title: 'Total peak count'
 #    ylab: 'Peak count'