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Commits on Jul 18, 2023

• Update README.md

  MarkusRainerSchmidt

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• Updated with link to publication

  MarkusRainerSchmidt

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Commits on May 12, 2023

• 2nd revision of MSV

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Commits on Apr 14, 2023

• intermediate

  MarkusRainerSchmidt

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Commits on Nov 30, 2021

• updated installation notes

  MarkusRainerSchmidt

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• Merge branch 'master' of https://github.com/ITBE-Lab/MSV-EVAL

  MarkusRainerSchmidt

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• started reconstruction for manta and gridss

  MarkusRainerSchmidt

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Commits on Nov 29, 2021

• SV calling parameters now relative to read size

  MarkusRainerSchmidt

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Commits on Nov 26, 2021

• intermediate

  MarkusRainerSchmidt

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Commits on Nov 24, 2021

• intermediate: running msv on 100nt reads

  MarkusRainerSchmidt

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• accuracy as function of recall

  MarkusRainerSchmidt

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Commits on Nov 22, 2021

• intermediate: tried forcing manta to output plain DUP but failed

  MarkusRainerSchmidt

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• accuracy recall analysis on yeast

  MarkusRainerSchmidt

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Commits on Nov 18, 2021

• analysis by size

  MarkusRainerSchmidt

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Commits on Nov 17, 2021

• gridss reconstruction & figure 2

  MarkusRainerSchmidt

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Commits on Nov 16, 2021

• gridss calls loaded into DB

  MarkusRainerSchmidt

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• intermediate

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Commits on Nov 15, 2021

• added gridss to yeast evaluation

  MarkusRainerSchmidt

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Commits on Nov 11, 2021

• intermediate

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Commits on Nov 9, 2021

• intermediate: looking for cases that break gridss assembly

  MarkusRainerSchmidt

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• rgidss running

  MarkusRainerSchmidt

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Commits on Nov 8, 2021

• intermediate: gridss and graphAligner

  MarkusRainerSchmidt

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Commits on Nov 5, 2021

• intermediate: setting up manta

  MarkusRainerSchmidt

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Commits on Nov 4, 2021

• started adding manta and graph aligner

  MarkusRainerSchmidt

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Commits on Nov 3, 2021

• changed aligner plot to bar plot

  MarkusRainerSchmidt

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Commits on Jan 18, 2021

• default paths match installation notes now

  MarkusRainerSchmidt

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Commits on Jan 14, 2021

• added Preprint and VM link

  MarkusRainerSchmidt

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Commits on Jan 13, 2021

• Create LICENSE

  MarkusRainerSchmidt

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• Added readme

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Commits on Jan 9, 2021

• added run_ksw setting

  MarkusRainerSchmidt

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Commits on Jan 8, 2021

• added installation notes

  MarkusRainerSchmidt

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Commits on Jan 4, 2021

• fixed folders

  MarkusRainerSchmidt

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Commits on Jan 1, 2021

• experiments all working

  MarkusRainerSchmidt

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Commits on Dec 29, 2020

• pretty everything up

  MarkusRainerSchmidt

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• nested sv analysis working again

  MarkusRainerSchmidt

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