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  1. RMK202_analysis RMK202_analysis Public

    Analysis pipeline for the cheese starter culture RMK202 analysis

    HTML 1

  2. Metagenomics_pipeline Metagenomics_pipeline Public

    Metagenomic analysis pipeline for the BMC Microbiology paper 2019

    HTML

  3. ReCycled ReCycled Public

    ReCycled is a tool to check the circularity of bacterial genome assemblies and circularise them according to the location of the replication initiation protein dnaA.

    HTML 2

  4. CRISPRscope CRISPRscope Public

    General analysis pipeline for CRISPR diversity within cheese-associated bacteria and communities

    HTML

  5. PostAssemblyAnalysis PostAssemblyAnalysis Public

    Quick quality control analysis after genomes assemblies

    R

  6. SAGE2_Phages SAGE2_Phages Public

    Tutorial analysis: SAGE spring 2020

    HTML 1