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v.1.2.2 minor documentation improvements (#45)
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* adding cover image to readthedocs; updated intro with image of methyl-suite
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Marc Maxmeister authored Feb 11, 2020
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Expand Up @@ -5,9 +5,11 @@ View on [ReadTheDocs.](https://life-epigenetics-methylprep.readthedocs-hosted.co
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## Methylprep package
## Methylprep is part of the methyl-suite

`methylprep` is part of a methyl-suite of python packages that provide functions to process and analyze DNA methylation data from Illumina arrays (27, 450k, and EPIC supported). The `methylprep` package contains functions to processing raw data files from arrays or downloading (and processing) public data sets from GEO (the NIH Gene Expression Omnibus is a database repository) or from ArrayExpress. It contains both high-level APIs for processing data from local files and low-level functionality allowing you to customize the flow of data and how it is processed.
![](https://github.com/LifeEGX/methylprep/blob/dev/docs/methyl-suite.png?raw=true)

`methylprep` is part of a methyl-suite of python packages that provide functions to process and analyze DNA methylation data from Illumina arrays (27, 450k, and EPIC/850k supported). The `methylprep` package contains functions for processing raw data files from arrays, or downloading (and processing) public data sets from GEO (the NIH Gene Expression Omnibus is a database repository), or from ArrayExpress. It contains both a command line interface (CLI) for processing data from local files, and a set of functions for building a custom pipeline in a jupyter notebook or python scripting environment. The aim is to offer a standard process, with flexibility for those who want it.

## Related packages

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