MAKEFLAGS += --warn-undefined-variables

.SHELLFLAGS := -eu -o pipefail -c

.DEFAULT_GOAL := all

root_dir := $(dir $(realpath $(firstword $(MAKEFILE_LIST))))

package_dir := $(cur_dir)methylprep

docs_dir := $(cur_dir)docs

conda_env_path := $(root_dir)conda-env.yml

requirements_path := $(root_dir)requirements.txt

venv_name := methylprep

.PHONY: all

all: init activate #help: inits and activates the environment

.PHONY: init

init: #help: Creates the virtual environment

@echo 'Creating conda environment:'

@echo '$(venv_name)'

@echo ''

@echo 'Command:'

conda env create --file $(conda_env_path)

.PHONY: update

update: #help: Updates the virtual environment

@echo 'Updating conda environment:'

@echo '$(venv_name)'

@echo ''

@echo 'Command:'

conda env update --file $(conda_env_path)

.PHONY: test

.SILENT: test

test: #help: Runs the unit test suite

( \

source activate $(venv_name); \

python setup.py test; \

)

clean: #help: Cleans python cache files

@echo 'Cleaning python cache files'

( \

find . -name '*.pyc' -type f -exec rm -rf {} + ; \

find . -name '__pycache__' -type d -exec rm -rf {} + ; \

)