Update workflow-utils dockerPull reference

Duke-GCB · Jan 24, 2018 · 0a7a35b · 0a7a35b
1 parent 5cb423c
commit 0a7a35b
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Showing 15 changed files with 15 additions and 15 deletions.
diff --git a/map/bowtie-log-read-count.cwl b/map/bowtie-log-read-count.cwl
@@ -5,7 +5,7 @@ description: "Get number of processed reads from Bowtie log."
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 requirements:
   - class: InlineJavascriptRequirement

diff --git a/map/preseq-percent-uniq-reads.cwl b/map/preseq-percent-uniq-reads.cwl
@@ -5,7 +5,7 @@ description: "Get number of processed reads from Bowtie log."
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 requirements:
   - class: InlineJavascriptRequirement

diff --git a/map/star-log-read-count.cwl b/map/star-log-read-count.cwl
@@ -5,7 +5,7 @@ description: "Get number of processed reads from STAR log."
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 requirements:
   - class: InlineJavascriptRequirement

diff --git a/peak_calling/bedpe-to-bed.cwl b/peak_calling/bedpe-to-bed.cwl
@@ -8,7 +8,7 @@ requirements:
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#bedpe"

diff --git a/peak_calling/count-reads-after-filtering.cwl b/peak_calling/count-reads-after-filtering.cwl
@@ -8,7 +8,7 @@ requirements:
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#peak_xls_file"

diff --git a/peak_calling/scale-bedgraph.cwl b/peak_calling/scale-bedgraph.cwl
@@ -5,7 +5,7 @@ description: "Scale BedGraph file by scaling factor computed using the number of
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#bedgraph_file"

diff --git a/qc/count-fastqc-reads.cwl b/qc/count-fastqc-reads.cwl
@@ -5,7 +5,7 @@ description: "Extracts read count from fastqc_data.txt"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#input_fastqc_data"

diff --git a/qc/diff.cwl b/qc/diff.cwl
@@ -5,7 +5,7 @@ description: "Compares 2 files"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#file1"

diff --git a/quant/negate-minus-strand-bedgraph.cwl b/quant/negate-minus-strand-bedgraph.cwl
@@ -4,7 +4,7 @@ class: CommandLineTool
 description: "Negate minus strand bedGraph values."
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 inputs:
   - id: "#bedgraph_file"
     type: File

diff --git a/spp/extract-best-frag-length.cwl b/spp/extract-best-frag-length.cwl
@@ -5,7 +5,7 @@ description: "Extracts best fragment length from SPP output text file"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#input_spp_txt_file"

diff --git a/utils/concat-files.cwl b/utils/concat-files.cwl
@@ -5,7 +5,7 @@ description: "Concat file1 and file2 into output_file."
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#input_file1"

diff --git a/utils/count-fastq-reads.cwl b/utils/count-fastq-reads.cwl
@@ -5,7 +5,7 @@ description: "Counts reads in a fastq file"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#input_fastq_file"

diff --git a/utils/extract-basename.cwl b/utils/extract-basename.cwl
@@ -5,7 +5,7 @@ description: "Extracts the base name of a file"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 requirements:
   - class: InlineJavascriptRequirement
 inputs:

diff --git a/utils/remove-extension.cwl b/utils/remove-extension.cwl
@@ -5,7 +5,7 @@ description: "Extracts the base name of a file"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#file_path"

diff --git a/utils/trunk-peak-score.cwl b/utils/trunk-peak-score.cwl
@@ -5,7 +5,7 @@ description: "Trunk scores in ENCODE bed6+4 files"
 
 hints:
   - class: DockerRequirement
-    dockerPull: 'dukegcb/workflow-utils'
+    dockerPull: 'reddylab/workflow-utils:ggr'
 
 inputs:
   - id: "#peaks"