Skip to content

Issues: Danko-Lab/BayesPrism

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

64 Open 42 Closed
64 Open 42 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Installation failed
#108 opened Dec 28, 2024 by niehe58
1
Inaccurate pseudobulk deconvolution with raw counts
#105 opened Nov 5, 2024 by emmanuelmekasha
1
removing outlier genes
#103 opened Oct 24, 2024 by aelhossiny
1
Can I used BayesPrism to perform deconvolution on the microarray results by the scRNAseq reference
#96 opened Aug 15, 2024 by ZhijieHanbioinfor
2
Question about calculate the immune cell fraction in bulk sequencing of tumor sample
#95 opened Aug 12, 2024 by threshold233
2
Re-input the result into the seurat object
#94 opened Jul 25, 2024 by JaneeeeeeW
1
Question and suggestion for running with large bulk sample set
#92 opened Jul 10, 2024 by FGOSeal
1
Using selected cell type markers can't improve the accuracy
#91 opened Jun 24, 2024 by sherry1000001
Using known cell type fractions
#90 opened Jun 19, 2024 by oriolpich
6
Mouse or human (?) for option "species"
#89 opened Jun 17, 2024 by yingzhang121
1
gene names of reference and mixture do not match!
#87 opened May 31, 2024 by rmontagn
2
Discrepancies Between matched Single-cell and Bulk Transcriptome Samples
#86 opened May 24, 2024 by Rui-Jing
1
How much memory consumed per core?
#84 opened May 7, 2024 by Pentayouth
1
I just want to quantify the various cell types within T cells, is this feasible?
#83 opened May 6, 2024 by M-jk22
1
Final Theta of cell state
#82 opened May 1, 2024 by RoyEHanna
3
library size normalization of inferred counts?
#77 opened Feb 6, 2024 by vravik
1
Can BayesPrism be used to deconvolute normal and disease muscle tissues to different cell types?
#76 opened Jan 15, 2024 by guodudou2
2
imput of Bulk RNA-seq have negative after romoving batch effect
#75 opened Jan 10, 2024 by Lily159753
1
Using Bayes Prism in Python
#74 opened Jan 4, 2024 by jw235
Issue with BayesPrism Gateway
#72 opened Dec 16, 2023 by soph1azhao
1
Do we need to merge our expression file (RNA-seq) and our reference file (scRNA-seq) as our input file?
#70 opened Dec 14, 2023 by misha832
1
question
#69 opened Dec 6, 2023 by iwanttoeatyo
1
Z expression matrix
#68 opened Nov 29, 2023 by martina811
7
Deconvolved estimates matching known cell type proportions
#67 opened Nov 28, 2023 by njrobins
2
cell state label is mandatory ?
#66 opened Nov 13, 2023 by martina811
2
ProTip! Type g i on any issue or pull request to go back to the issue listing page.