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@ComparativeGenomicsToolkit

ComparativeGenomicsToolkit

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  1. Comparative-Annotation-Toolkit Public

    Python 175 48

  2. cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    C 553 113

  3. hal Public

    Hierarchical Alignment Format

    C++ 167 39

  4. hal2vg Public

    Convert HAL to VG

    C++ 21 2

  5. taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    C 25 4

  6. paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    C 6 2

Repositories

Showing 10 of 32 repositories
  • cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    C 553 113 486 7 Updated Feb 28, 2025
  • hal Public

    Hierarchical Alignment Format

    C++ 167 39 109 0 Updated Dec 30, 2024
  • taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    C 25 MIT 4 9 2 Updated Dec 16, 2024
  • paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    C 6 2 1 0 Updated Nov 18, 2024
  • mafTools Public Forked from dentearl/mafTools

    Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    C 11 32 0 0 Updated Nov 16, 2024
  • cactus-gfa-tools Public
    C++ 1 MIT 0 2 0 Updated Aug 30, 2024
  • hal2vg Public

    Convert HAL to VG

    C++ 21 MIT 2 7 0 Updated Aug 12, 2024
  • cactus2hal Public
    C++ 0 1 0 0 Updated Jul 17, 2024
  • RetroFinder Public

    Tool for finding retroposed genes in genomes

    C 1 MIT 0 0 0 Updated Apr 6, 2024
  • Comparative-Annotation-Toolkit Public
    Python 175 Apache-2.0 48 110 4 Updated Mar 27, 2024
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