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groups.tab: Add validation test

bug

enhancement

Status: Open.

#478 In CCBR/Pipeliner;

· kopardev opened on Dec 29, 2022

RNASeq DE naming error due to "." in sample

Status: Open.

#476 In CCBR/Pipeliner;

· slsevilla opened on Sep 8, 2022

Use msigdb for pathway analysis; perform additional analysis on specific db/pathway

Status: Open.

#474 In CCBR/Pipeliner;

· slsevilla opened on Aug 8, 2022

Parse GTF on the fly

RNASeq

Status: Open.

#462 In CCBR/Pipeliner;

· kopardev opened on Oct 29, 2020

Move to STAR version >= 2.7.6a

RNASeq

Status: Open.

#461 In CCBR/Pipeliner;

· kopardev opened on Oct 29, 2020

Improvement to differential expression html reports

RNASeq

Status: Open.

#459 In CCBR/Pipeliner;

· tovahmarkowitz opened on Sep 3, 2020

Calculate actual mean fragment length for PE data. Use for sicer PE.

ChIPSeq

Status: Open.

#458 In CCBR/Pipeliner;

· tovahmarkowitz opened on Aug 31, 2020

Fix error with PE duplicate removal. Incorporate Vishal's code.

ChIPSeq

Status: Open.

#457 In CCBR/Pipeliner;

· tovahmarkowitz opened on Aug 31, 2020

miRSeq DE

miRSeq

Status: Open.

#455 In CCBR/Pipeliner;

· wong-nw opened on Jun 26, 2020

scrnaDE

scRNASeq

Status: Open.

#454 In CCBR/Pipeliner;

· wong-nw opened on Jun 25, 2020

scrnaQC_Reports.R: New Rmd for all SingleR annotations

scRNASeq

Status: Open.

#453 In CCBR/Pipeliner;

· wong-nw opened on Jun 25, 2020

scrnaQC.R: Adjust image title and axis-label size

scRNASeq

Status: Open.

#452 In CCBR/Pipeliner;

· wong-nw opened on Jun 25, 2020