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{{ cookiecutter.pipeline_name }}: {{ cookiecutter.pipeline_short_description }}

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

The {{ cookiecutter.pipeline_name }} pipeline comes with documentation about the pipeline, found in the docs/ directory:

1. Installation
2. Pipeline configuration
   • Local installation
   • Adding your own system
3. Running the pipeline
4. Output and how to interpret the results
5. Troubleshooting

This pipeline was written by {{ cookiecutter.author_name }} ([{{ cookiecutter.author_github_username }}]({{ cookiecutter.author_homepage }})) at [{{ cookiecutter.author_affiliation }}]({{ cookiecutter.author_affiliation_homepage }}).