updating docs

AllenInstitute · Nov 4, 2024 · 9118866 · 9118866
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Showing 3 changed files with 33 additions and 12 deletions.
diff --git a/docs/autodocs/source/conf.py b/docs/autodocs/source/conf.py
@@ -126,7 +126,8 @@
     # '**': ['custom_sidebar.html', 'localtoc.html', 'searchbox.html'],
     # '**': ['user_guide'],
     # "simulators_guide": ["user_guide.html"],
-    # "news_and_events": []
+    "news_and_events": [],
+    "contact_us": [],
 }
 
 # html_sidebars = {
@@ -258,5 +259,5 @@ def autodoc_skip_member(app, what, name, obj, skip, options):
 
 
 def setup(app):
-    # copy_tutorials()
+    copy_tutorials()
     app.connect('autodoc-skip-member', autodoc_skip_member)
diff --git a/docs/autodocs/source/tutorials.rst b/docs/autodocs/source/tutorials.rst
@@ -2,6 +2,24 @@
 Tutorials and Examples
 ######################
 
+.. toctree::
+    :hidden:
+    :maxdepth: 1
+
+    Builder: Using the Network Builder <tutorial_NetworkBuilder_Intro>
+    BioNet: Single cell with current injection <tutorial_single_cell_clamped>
+    BioNet: Single with with synaptic input <tutorial_single_cell_syn>
+    BioNet: Multiple Nodes with single cell-type <tutorial_single_pop>
+    BioNet: Heterogeneous network <tutorial_multi_pop>
+    PointNet: Point-neuron modeling <tutorial_pointnet_modeling>
+    FilterNet: Full-field flashing movie <tutorial_filter_models>
+    Auditory FilterNet: Generating stimuli from auditory input <tutorial_auditory_filternet>
+    PopNet: Population-based firing rate models <tutorial_population_modeling>
+
+
+
+
+
 
 Basic Usage
 ===========
@@ -16,6 +34,7 @@ Basic Usage
 
 
     .. grid-item-card:: Building Networks models with the BMTK NetworkBuilder 
+        :link: tutorial_NetworkBuilder_Intro.html
 
         Using the BMTK NetworkBuilder to create SONATA based network models for use in simulation and analysis
 

diff --git a/docs/autodocs/source/user_guide.rst b/docs/autodocs/source/user_guide.rst
@@ -1,21 +1,22 @@
+.. toctree::
+    :hidden:
+    :maxdepth: 3
+    :caption: Tutorials
+
+    tutorials
+
+
 .. toctree::
     :hidden:
     :maxdepth: 2
     :caption: User Guide
 
-    self
+    installation
     user_guide
     builder
     simulators_guide
     analyzer
 
-.. toctree::
-    :hidden:
-    :maxdepth: 2
-    :caption: Tutorials
-
-    tutorials
-
 
 ##########
 User Guide
@@ -44,7 +45,7 @@ Getting Started
     :gutter: 1
 
     .. grid-item-card::  Building Networks
-        :link: builder_guide 
+        :link: builder.rst
         :img-bottom: _images/builder_complete_network.jpg
 
         *NetworkBuilder* 
@@ -58,7 +59,7 @@ Getting Started
 
 
     .. grid-item-card:: Analyzing Networks and Simulations
-        :link: analzer
+        :link: analyzer.rst
         :img-bottom: _images/raster_120cells_orig.png
 
         *Plotting simulation results and statistics*