This application is designed to help biologist with segmentation based on threshold and connected components

• tifffile
• SimpleITK
• Matplotlib
• Numpy
• PyQt in version 4 or 5
• appdirs
• h5py

http://nucleus3d.cent.uw.edu.pl/PartSeg (binaries here)

Saved project are tar files compressed with gzip or bz2

Metadata are saved in data.json file (in json format) images/mask are saved as *.npy (numpy array format)

Laboratory of functional and structural genomics http://nucleus3d.cent.uw.edu.pl/