Abstract
Haematopoietic stem and progenitor cell (HSPC) gene therapy has emerged as an effective treatment modality for monogenic disorders of the blood system such as primary immunodeficiencies and β-thalassaemia. Medicinal products based on autologous HSPCs corrected using lentiviral and gammaretroviral vectors have now been approved for clinical use, and the site-specific genome modification of HSPCs using gene editing techniques such as CRISPR–Cas9 has shown great clinical promise. Preclinical studies have shown engineered HSPCs could also be used to cross-correct non-haematopoietic cells in neurodegenerative metabolic diseases. Here, we review the most recent advances in HSPC gene therapy and discuss emerging strategies for using HSPC gene therapy for a range of diseases.
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References
Chabannon, C. et al. Hematopoietic stem cell transplantation in its 60s: a platform for cellular therapies. Sci. Transl Med. 10, eaap9630 (2018).
Carreras, E., Dufour, C., Mohty, M. & Kröger, N. The EBMT Handbook: Hematopoietic Stem Cell Transplantation and Cellular Therapies (Springer, 2019).
Gatti, R. A., Meuwissen, H. J., Allen, H. D., Hong, R. & Good, R. A. Immunological reconstitution of sex-linked lymphopenic immunological deficiency. Lancet 2, 1366–1369 (1968).
Bach, F. H., Albertini, R. J., Joo, P., Anderson, J. L. & Bortin, M. M. Bone-marrow transplantation in a patient with the Wiskott-Aldrich syndrome. Lancet 2, 1364–1366 (1968).
Styczynski, J. et al. Death after hematopoietic stem cell transplantation: changes over calendar year time, infections and associated factors. Bone Marrow Transplant. 55, 126–136 (2020).
Dunbar, C. E. et al. Gene therapy comes of age. Science 359, eaan4672 (2018).
Naldini, L. Genetic engineering of hematopoiesis: current stage of clinical translation and future perspectives. EMBO Mol. Med. 11, e99858 (2019).
Kohn, D. B. Gene therapy for blood diseases. Curr. Opin. Biotechnol. 60, 39–45 (2019).
Bordignon, C. et al. Gene therapy in peripheral blood lymphocytes and bone marrow for ADA-immunodeficient patients. Science 270, 470–475 (1995).
Blaese, R. M. et al. Treatment of severe combined immunodeficiency disease (SCID) due to adenosine deaminase deficiency with CD34+ selected autologous peripheral blood cells transduced with a human ADA gene. Amendment to clinical research project, project 90-C-195, January 10, 1992. Hum. Gene Ther. 4, 521–527 (1993).
Kohn, D. B. et al. Engraftment of gene-modified umbilical cord blood cells in neonates with adenosine deaminase deficiency. Nat. Med. 1, 1017–1023 (1995).
Blaese, R. M. et al. T lymphocyte-directed gene therapy for ADA-SCID: initial trial results after 4 years. Science 270, 475–480 (1995).
Cavazzana-Calvo, M. et al. Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease. Science 288, 669–672 (2000). This study is one of the first demonstrations of clinically successful gene therapy in humans.
Aiuti, A. et al. Correction of ADA-SCID by stem cell gene therapy combined with nonmyeloablative conditioning. Science 296, 2410–2413 (2002). This study is the first demonstration of clinically successful gene therapy with conditioning.
Howe, S. J. et al. Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients. J. Clin. Invest. 118, 3143–3150 (2008).
Hacein-Bey-Abina, S. et al. A serious adverse event after successful gene therapy for X-linked severe combined immunodeficiency. N. Engl. J. Med. 348, 255–256 (2003).
Thornley, I. et al. Differences in cell cycle kinetics of candidate engrafting cells in human bone marrow and mobilized peripheral blood. Exp. Hematol. 29, 525–533 (2001).
Steidl, U. et al. Gene expression profiling identifies significant differences between the molecular phenotypes of bone marrow-derived and circulating human CD34+ hematopoietic stem cells. Blood 99, 2037–2044 (2002).
Lidonnici, M. R. et al. Plerixafor and G-CSF combination mobilizes hematopoietic stem and progenitors cells with a distinct transcriptional profile and a reduced in vivo homing capacity compared to plerixafor alone. Haematologica 102, e120–e124 (2017).
Basso-Ricci, L. et al. Multiparametric whole blood dissection: a one-shot comprehensive picture of the human hematopoietic system. Cytometry A 91, 952–965 (2017).
Tucci, F. et al. Bone marrow harvesting from paediatric patients undergoing haematopoietic stem cell gene therapy. Bone Marrow Transpl. 54, 1995–2003 (2019).
Ferrua, F. et al. Lentiviral haemopoietic stem/progenitor cell gene therapy for treatment of Wiskott-Aldrich syndrome: interim results of a non-randomised, open-label, phase 1/2 clinical study. Lancet Haematol. 6, e239–e253 (2019).
Gertz, M. A. Current status of stem cell mobilization. Br. J. Haematol. 150, 647–662 (2010).
Thompson, A. A. et al. Gene therapy in patients with transfusion-dependent beta-thalassemia. N. Engl. J. Med. 378, 1479–1493 (2018). This reports a clinical trial for β-thalassaemia reporting transfusion independence.
Marktel, S. et al. Intrabone hematopoietic stem cell gene therapy for adult and pediatric patients affected by transfusion-dependent β-thalassemia. Nat. Med. 25, 234–241 (2019). This reports one of the first clinical trials for β-thalassaemia using intrabone injection of a drug product, reporting transfusion independence in paediatric patients.
Eichler, F. et al. Hematopoietic stem-cell gene therapy for cerebral adrenoleukodystrophy. N. Engl. J. Med. 377, 1630–1638 (2017).
Rio, P. et al. Successful engraftment of gene-corrected hematopoietic stem cells in non-conditioned patients with Fanconi anemia. Nat. Med. 25, 1396–1401 (2019). This is a proof-of-principle study for the correction of bone marrow failure.
Zonari, E. et al. Efficient Ex vivo engineering and expansion of highly purified human hematopoietic stem and progenitor cell populations for gene therapy. Stem Cell Rep. 8, 977–990 (2017).
Masiuk, K. E. et al. Improving gene therapy efficiency through the enrichment of human hematopoietic stem cells. Mol. Ther. 25, 2163–2175 (2017).
Mulligan, R. C. The basic science of gene therapy. Science 260, 926–932 (1993).
Miller, A. D., Miller, D. G., Garcia, J. V. & Lynch, C. M. Use of retroviral vectors for gene transfer and expression. Methods Enzymol. 217, 581–599 (1993).
Naldini, L. et al. In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272, 263–267 (1996). This study describes the development of lentiviral vectors for gene therapy.
Cartier, N. et al. Hematopoietic stem cell gene therapy with a lentiviral vector in X-linked adrenoleukodystrophy. Science 326, 818–823 (2009). This study represents the first clinical application of lentiviral-mediated gene therapy and demonstrates the correction of a neurometabolic disease.
Hacein-Bey-Abina, S. et al. A modified gamma-retrovirus vector for X-linked severe combined immunodeficiency. N. Engl. J. Med. 371, 1407–1417 (2014). This study outlines the development of LTR-modified retroviral vectors to reduce risk of mutagenesis.
Biasco, L., Rothe, M., Schott, J. W. & Schambach, A. Integrating vectors for gene therapy and clonal tracking of engineered hematopoiesis. Hematol. Oncol. Clin. North Am. 31, 737–752 (2017).
Porteus, M. H. A new class of medicines through DNA editing. N. Engl. J. Med. 380, 947–959 (2019).
Lombardo, A. et al. Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery. Nat. Biotechnol. 25, 1298–1306 (2007).
Lombardo, A. & Naldini, L. Genome editing: a tool for research and therapy: targeted genome editing hits the clinic. Nat. Med. 20, 1101–1103 (2014).
Dever, D. P. et al. CRISPR/Cas9 beta-globin gene targeting in human haematopoietic stem cells. Nature 539, 384–389 (2016).
Genovese, P. et al. Targeted genome editing in human repopulating haematopoietic stem cells. Nature 510, 235–240 (2014). The studies by Genovese et al. (2014) and Dever et al. (2016) both provide evidence for efficient gene editing of human HSPCs.
Schiroli, G. et al. Preclinical modeling highlights the therapeutic potential of hematopoietic stem cell gene editing for correction of SCID-X1. Sci. Transl Med. 9, eaan0820 (2017).
Pavel-Dinu, M. et al. Gene correction for SCID-X1 in long-term hematopoietic stem cells. Nat. Commun. 10, 1634 (2019).
Rai, R. et al. Targeted gene correction of human hematopoietic stem cells for the treatment of Wiskott-Aldrich syndrome. Nat. Commun. 11, 4034 (2020).
Wu, Y. et al. Highly efficient therapeutic gene editing of human hematopoietic stem cells. Nat. Med. 25, 776–783 (2019).
DeWitt, M. A. et al. Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells. Sci. Transl Med. 8, 360ra134 (2016).
Ferrari, S. et al. Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking. Nat. Biotechnol. 38, 1298–1308 (2020).
Hendel, A. et al. Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells. Nat. Biotechnol. 33, 985–989 (2015).
Hoban, M. D. et al. Correction of the sickle cell disease mutation in human hematopoietic stem/progenitor cells. Blood 125, 2597–2604 (2015).
Chang, K. H. et al. Long-term engraftment and fetal globin induction upon BCL11A gene editing in bone-marrow-derived CD34+ hematopoietic stem and progenitor cells. Mol. Ther. Methods Clin. Dev. 4, 137–148 (2017).
Corbacioglu, S. et al. Initial safety and efficacy results with a single dose of autologous CRISPR-CAS9 modified CD34+ hematopietic stem and progenitor cells in transfusion-dependent ß-thalassemia and sickle cell disease. HemaSphere 4, 101 (2020).
Hoban, M. D. et al. CRISPR/Cas9-mediated correction of the sickle mutation in human CD34+ cells. Mol. Ther. 24, 1561–1569 (2016).
Canver, M. C. et al. BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature 527, 192–197 (2015). This study provides a dissection of the BCL11A erythroid-specific enhancer as a target for gene editing.
Martyn, G. E. et al. Natural regulatory mutations elevate the fetal globin gene via disruption of BCL11A or ZBTB7A binding. Nat. Genet. 50, 498–503 (2018).
Metais, J. Y. et al. Genome editing of HBG1 and HBG2 to induce fetal hemoglobin. Blood Adv. 3, 3379–3392 (2019).
Wienert, B. et al. Editing the genome to introduce a beneficial naturally occurring mutation associated with increased fetal globin. Nat. Commun. 6, 7085 (2015).
Traxler, E. A. et al. A genome-editing strategy to treat beta-hemoglobinopathies that recapitulates a mutation associated with a benign genetic condition. Nat. Med. 22, 987–990 (2016).
Antoniani, C. et al. Induction of fetal hemoglobin synthesis by CRISPR/Cas9-mediated editing of the human beta-globin locus. Blood 131, 1960–1973 (2018).
Weber, L. et al. Editing a gamma-globin repressor binding site restores fetal hemoglobin synthesis and corrects the sickle cell disease phenotype. Sci. Adv. 6, eaay9392 (2020).
Kosicki, M., Tomberg, K. & Bradley, A. Repair of double-strand breaks induced by CRISPR-Cas9 leads to large deletions and complex rearrangements. Nat. Biotechnol. 36, 765–771 (2018).
Galanello, R. et al. Erythropoiesis following bone marrow transplantation from donors heterozygous for beta-thalassaemia. Br. J. Haematol. 72, 561–566 (1989).
Paciaroni, K. & Lucarelli, G. Hemopoietic stem cell transplantation failure followed by switch to stable production of fetal hemoglobin. Blood 119, 1091–1092 (2012).
Rees, H. A. & Liu, D. R. Base editing: precision chemistry on the genome and transcriptome of living cells. Nat. Rev. Genet. 19, 770–788 (2018).
Anzalone, A. V. et al. Search-and-replace genome editing without double-strand breaks or donor DNA. Nature 576, 149–157 (2019).
Anzalone, A. V., Koblan, L. W. & Liu, D. R. Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors. Nat. Biotechnol. 38, 824–844 (2020).
Piras, F. et al. Lentiviral vectors escape innate sensing but trigger p53 in human hematopoietic stem and progenitor cells. EMBO Mol. Med. 9, 1198–1211 (2017).
Schiroli, G. et al. Precise gene editing preserves hematopoietic stem cell function following transient p53-mediated DNA damage response. Cell Stem Cell 24, 551–565.e8 (2019).
Mazurier, F., Gan, O. I., McKenzie, J. L., Doedens, M. & Dick, J. E. Lentivector-mediated clonal tracking reveals intrinsic heterogeneity in the human hematopoietic stem cell compartment and culture-induced stem cell impairment. Blood 103, 545–552 (2004).
Biffi, A. et al. Lentiviral hematopoietic stem cell gene therapy benefits metachromatic leukodystrophy. Science 341, 1233158 (2013). This study is the first to demonstrate the effectiveness of gene therapy for MLD, for which there is no other treatment.
Colomer-Lluch, M., Ruiz, A., Moris, A. & Prado, J. G. Restriction factors: from intrinsic viral restriction to shaping cellular immunity against HIV-1. Front. Immunol. 9, 2876 (2018).
Petrillo, C. et al. Cyclosporine H overcomes innate immune restrictions to improve lentiviral transduction and gene editing in human hematopoietic stem cells. Cell stem Cell 23, 820–832.e9 (2018).
Hofig, I. et al. Poloxamer Synperonic F108 improves cellular transduction with lentiviral vectors. J. Gene Med. 14, 549–560 (2012).
Schott, J. W. et al. Enhancing lentiviral and alpharetroviral transduction of human hematopoietic stem cells for clinical application. Mol. Ther. Methods Clin. Dev. 14, 134–147 (2019).
Wang, C. X. et al. Rapamycin relieves lentiviral vector transduction resistance in human and mouse hematopoietic stem cells. Blood 124, 913–923 (2014).
Heffner, G. C. et al. Prostaglandin E2 increases lentiviral vector transduction efficiency of adult human hematopoietic stem and progenitor cells. Mol. Ther. 26, 320–328 (2018).
Bernardo, M. E. & Aiuti, A. The role of conditioning in hematopoietic stem cell gene therapy. Hum. Gene Ther. 27, 741–748 (2016).
Rio, P. et al. Engraftment and in vivo proliferation advantage of gene-corrected mobilized CD34+ cells from Fanconi anemia patients. Blood 130, 1535–1542 (2017).
Sessa, M. et al. Lentiviral haemopoietic stem-cell gene therapy in early-onset metachromatic leukodystrophy: an ad-hoc analysis of a non-randomised, open-label, phase 1/2 trial. Lancet 388, 476–487 (2016).
Capotondo, A. et al. Brain conditioning is instrumental for successful microglia reconstitution following hematopoietic stem cell transplantation. Proc. Natl Acad. Sci. USA 109, 15018–15023 (2012).
Dalle, J. H. et al. State-of-the-art fertility preservation in children and adolescents undergoing haematopoietic stem cell transplantation: a report on the expert meeting of the Paediatric Diseases Working Party (PDWP) of the European Society for Blood and Marrow Transplantation (EBMT) in Baden, Austria, 29-30 September 2015. Bone Marrow Transpl. 52, 1029–1035 (2017).
Kwon, H. S. et al. Anti-human CD117 antibody-mediated bone marrow niche clearance in nonhuman primates and humanized NSG mice. Blood 133, 2104–2108 (2019).
Palchaudhuri, R. et al. Non-genotoxic conditioning for hematopoietic stem cell transplantation using a hematopoietic-cell-specific internalizing immunotoxin. Nat. Biotechnol. 34, 738–745 (2016).
Agarwal, R. et al. Toxicity-free hematopoietic stem cell engraftment achieved with anti-CD117 monoclonal antibody conditioning. Biol. Blood Marrow Transplant. 25, S92 (2019).
Crippa, S. et al. Bone marrow stromal cells from beta-thalassemia patients have impaired hematopoietic supportive capacity. J. Clin. Invest. 129, 1566–1580 (2019).
Aprile, A. et al. Hematopoietic stem cell function in beta-thalassemia is impaired and is rescued by targeting the bone marrow niche. Blood 136, 610–622 (2020).
Aiuti, A. et al. Immune reconstitution in ADA-SCID after PBL gene therapy and discontinuation of enzyme replacement. Nat. Med. 8, 423–425 (2002).
Cicalese, M. P. et al. Update on the safety and efficacy of retroviral gene therapy for immunodeficiency due to adenosine deaminase deficiency. Blood 128, 45–54 (2016).
Gaspar, H. B. et al. Gene therapy of X-linked severe combined immunodeficiency by use of a pseudotyped gammaretroviral vector. Lancet 364, 2181–2187 (2004).
Aiuti, A. et al. Gene therapy for immunodeficiency due to adenosine deaminase deficiency. N. Engl. J. Med. 360, 447–458 (2009).
Hacein-Bey Abina, S. et al. Outcomes following gene therapy in patients with severe Wiskott-Aldrich syndrome. JAMA 313, 1550–1563 (2015).
Kohn, D. B. et al. Lentiviral gene therapy for X-linked chronic granulomatous disease. Nat. Med. 26, 200–206 (2020).
Wei, Q. & Frenette, P. S. Niches for hematopoietic stem cells and their progeny. Immunity 48, 632–648 (2018).
Kfoury, Y. & Scadden, D. T. Mesenchymal cell contributions to the stem cell niche. Cell Stem Cell 16, 239–253 (2015).
Tormin, A. et al. CD146 expression on primary nonhematopoietic bone marrow stem cells is correlated with in situ localization. Blood 117, 5067–5077 (2011).
Sacchetti, B. et al. Self-renewing osteoprogenitors in bone marrow sinusoids can organize a hematopoietic microenvironment. Cell 131, 324–336 (2007).
Abarrategi, A. et al. Modeling the human bone marrow niche in mice: from host bone marrow engraftment to bioengineering approaches. J. Exp. Med. 215, 729–743 (2018).
Reinisch, A., Hernandez, D. C., Schallmoser, K. & Majeti, R. Generation and use of a humanized bone-marrow-ossicle niche for hematopoietic xenotransplantation into mice. Nat. Protoc. 12, 2169–2188 (2017).
de Lima, M. et al. Cord-blood engraftment with ex vivo mesenchymal-cell coculture. N. Engl. J. Med. 367, 2305–2315 (2012).
Ball, L. M. et al. Cotransplantation of ex vivo expanded mesenchymal stem cells accelerates lymphocyte recovery and may reduce the risk of graft failure in haploidentical hematopoietic stem-cell transplantation. Blood 110, 2764–2767 (2007).
Biffi, A. et al. Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection. Blood 117, 5332–5339 (2011).
Cattoglio, C. et al. Hot spots of retroviral integration in human CD34+ hematopoietic cells. Blood 110, 1770–1778 (2007).
Felice, B. et al. Transcription factor binding sites are genetic determinants of retroviral integration in the human genome. PLoS ONE 4, e4571 (2009).
Biasco, L. et al. Integration profile of retroviral vector in gene therapy treated patients is cell-specific according to gene expression and chromatin conformation of target cell. EMBO Mol. Med. 3, 89–101 (2011).
Cattoglio, C. et al. High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors. Blood 116, 5507–5517 (2010).
De Ravin, S. S. et al. Enhancers are major targets for murine leukemia virus vector integration. J. Virol. 88, 4504–4513 (2014).
Bushman, F. D. Retroviral insertional mutagenesis in humans: evidence for four genetic mechanisms promoting expansion of cell clones. Mol. Ther. 28, 352–356 (2020). This is an up-to-date review summarizing mechanisms of vector-mediated genotoxicity.
Aiuti, A. et al. Multilineage hematopoietic reconstitution without clonal selection in ADA-SCID patients treated with stem cell gene therapy. J. Clin. Invest. 117, 2233–2240 (2007).
Wang, G. P. et al. Dynamics of gene-modified progenitor cells analyzed by tracking retroviral integration sites in a human SCID-X1 gene therapy trial. Blood 115, 4356–4366 (2010).
Braun, C. J. et al. Gene therapy for Wiskott-Aldrich syndrome–long-term efficacy and genotoxicity. Sci. Transl Med. 6, 227ra233 (2014).
Ott, M. G. et al. Correction of X-linked chronic granulomatous disease by gene therapy, augmented by insertional activation of MDS1-EVI1, PRDM16 or SETBP1. Nat. Med. 12, 401–409 (2006).
Gabriel, R. et al. Comprehensive genomic access to vector integration in clinical gene therapy. Nat. Med. 15, 1431–1436 (2009).
Biasco, L., Rothe, M., Buning, H. & Schambach, A. Analyzing the genotoxicity of retroviral vectors in hematopoietic cell gene therapy. Mol. Ther. Methods Clin. Dev. 8, 21–30 (2018).
Hacein-Bey-Abina, S. et al. LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1. Science 302, 415–419 (2003).
Cavazzana-Calvo, M. et al. Transfusion independence and HMGA2 activation after gene therapy of human beta-thalassaemia. Nature 467, 318–322 (2010).
Aiuti, A. et al. Lentiviral hematopoietic stem cell gene therapy in patients with Wiskott-Aldrich syndrome. Science 341, 1233151 (2013).
European Medicines Agency. Guideline on safety and efficacy follow-up and risk management of advanced therapy medicinal products (EMA, 2008).
Biasco, L. et al. In vivo tracking of human hematopoiesis reveals patterns of clonal dynamics during early and steady-state reconstitution phases. Cell Stem Cell 19, 107–119 (2016).
Xu, S., Kim, S., Chen, I. S. Y. & Chou, T. Modeling large fluctuations of thousands of clones during hematopoiesis: the role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque. PLoS Comput. Biol. 14, e1006489 (2018).
Scala, S. et al. Dynamics of genetically engineered hematopoietic stem and progenitor cells after autologous transplantation in humans. Nat. Med. 24, 1683–1690 (2018).
Ochs, H. D. & Hagin, D. Primary immunodeficiency disorders: general classification, new molecular insights, and practical approach to diagnosis and treatment. Ann. Allergy Asthma Immunol. 112, 489–495 (2014).
Tangye, S. G. et al. Human inborn errors of immunity: 2019 update on the classification from the International Union of Immunological Societies Expert Committee. J. Clin. Immunol. 40, 24–64 (2020).
Gennery, A. R. & Lankester, A. Long term outcome and immune function after hematopoietic stem cell transplantation for primary immunodeficiency. Front. Pediatrics 7, 381 (2019).
Pai, S. Y. et al. Transplantation outcomes for severe combined immunodeficiency, 2000-2009. N. Engl. J. Med. 371, 434–446 (2014).
Castagnoli, R., Delmonte, O. M., Calzoni, E. & Notarangelo, L. D. Hematopoietic stem cell transplantation in primary immunodeficiency diseases: current status and future perspectives. Front. Pediatrics 7, 295 (2019).
Buckley, R. H. Molecular defects in human severe combined immunodeficiency and approaches to immune reconstitution. Annu. Rev. Immunol. 22, 625–655 (2004).
Wada, T. & Candotti, F. Somatic mosaicism in primary immune deficiencies. Curr. Opin. Allergy Clin. Immunol. 8, 510–514 (2008).
Fischer, A. & Hacein-Bey-Abina, S. Gene therapy for severe combined immunodeficiencies and beyond. J. Exp. Med.217, e20190607 (2020).
Touzot, F. et al. Faster T-cell development following gene therapy compared with haploidentical HSCT in the treatment of SCID-X1. Blood 125, 3563–3569 (2015).
Wiekmeijer, A. S. et al. Overexpression of LMO2 causes aberrant human T-cell development in vivo by three potentially distinct cellular mechanisms. Exp. Hematol. 44, 838–849 e839 (2016).
De Ravin, S. S. et al. Lentiviral hematopoietic stem cell gene therapy for X-linked severe combined immunodeficiency. Sci. Transl Med. 8, 335ra357 (2016).
Mamcarz, E. et al. Lentiviral gene therapy combined with low-dose busulfan in infants with SCID-X1. N. Engl. J. Med. 380, 1525–1534 (2019).
Gaspar, H. B. et al. Hematopoietic stem cell gene therapy for adenosine deaminase-deficient severe combined immunodeficiency leads to long-term immunological recovery and metabolic correction. Sci. Transl Med. 3, 97ra80 (2011).
Shaw, K. L. et al. Clinical efficacy of gene-modified stem cells in adenosine deaminase-deficient immunodeficiency. J. Clin. Invest. 127, 1689–1699 (2017).
Aiuti, A., Roncarolo, M. G. & Naldini, L. Gene therapy for ADA-SCID, the first marketing approval of an ex vivo gene therapy in Europe: paving the road for the next generation of advanced therapy medicinal products. EMBO Mol. Med. 9, 737–740 (2017). This work provides the history of clinical development for the first approved HSPC-based gene therapy.
Cassani, B. et al. Integration of retroviral vectors induces minor changes in the transcriptional activity of T cells from ADA-SCID patients treated with gene therapy. Blood 114, 3546–3556 (2009).
Kohn, D. B. et al. Consensus approach for the management of severe combined immune deficiency caused by adenosine deaminase deficiency. J. Allergy Clin. Immunol. 143, 852–863 (2019).
Cavazzana, M., Bushman, F. D., Miccio, A., Andre-Schmutz, I. & Six, E. Gene therapy targeting haematopoietic stem cells for inherited diseases: progress and challenges. Nat. Rev. Drug Discov. 18, 447–462 (2019).
Migliavacca, M. et al. First occurrence of plasmablastic lymphoma in adenosine deaminase-deficient severe combined immunodeficiency disease patient and review of the literature. Front. Immunol. 9, 113 (2018).
Thrasher, A. J. & Burns, S. O. WASP: a key immunological multitasker. Nat. Rev. Immunol. 10, 182–192 (2010).
Sereni, L. et al. Lentiviral gene therapy corrects platelet phenotype and function in patients with Wiskott-Aldrich syndrome. J. Allergy Clin. Immunol. 144, 825–838 (2019).
Weisser, M. et al. Hyperinflammation in patients with chronic granulomatous disease leads to impairment of hematopoietic stem cell functions. J. Allergy Clin. Immunol. 138, 219–228 e219 (2016).
Benjelloun, F. et al. Stable and functional lymphoid reconstitution in Artemis-deficient mice following lentiviral Artemis gene transfer into hematopoietic stem cells. Mol. Ther. 16, 1490–1499 (2008).
Pike-Overzet, K. et al. Successful RAG1-SCID gene therapy depends on the level of RAG1 expression. J. Allergy Clin. Immunol. 134, 242–243 (2014).
Morgan, R. A. et al. Improved titer and gene transfer by lentiviral vectors using novel, small beta-globin locus control region elements. Mol. Ther. 28, 328–340 (2020).
Angelucci, E. et al. Hematopoietic stem cell transplantation in thalassemia major and sickle cell disease: indications and management recommendations from an international expert panel. Haematologica 99, 811–820 (2014).
Schuessler-Lenz, M., Enzmann, H. & Vamvakas, S. Regulators’ advice can make a difference: European Medicines Agency approval of Zynteglo for beta thalassemia. Clin. Pharmacol. Ther. 107, 492–494 (2020).
Scaramuzza, S. et al. Clinical outcomes from a phase I/II gene therapy trial for patients affected by severe transfusion dependent β-thalassemia: two years follow-up. Mol. Ther. 28 (Suppl. 1), 168 (2020).
Sundd, P., Gladwin, M. T. & Novelli, E. M. Pathophysiology of sickle cell disease. Annu. Rev. Pathol. 14, 263–292 (2019).
Park, S. Y. et al. Pathologic angiogenesis in the bone marrow of humanized sickle cell mice is reversed by blood transfusion. Blood 135, 2071–2084 (2020).
Sankaran, V. G. et al. Human fetal hemoglobin expression is regulated by the developmental stage-specific repressor BCL11A. Science 322, 1839–1842 (2008).
Bauer, D. E. et al. An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Science 342, 253–257 (2013).
Ribeil, J. A. et al. Gene therapy in a patient with sickle cell disease. N. Engl. J. Med. 376, 848–855 (2017). This study describes the first gene therapy trial for SCD.
Kanter, J. et al. Resolution of sickle cell disease manifestations in patients treated with lentiglobin gene therapy: updated results from the phase 1/2 Hgb-206 group C study. Blood 134, 990 (2019).
Tisdale, F. J. et al. Resolution of sickle cell disease (SCD) manifestations in patients treated with lentiglobin gene therapy: Updated results from the phase 1/2 HGB-206 group C study. Mol. Ther. 28, 553 (2020).
Malik, P. et al. Gene therapy for sickle cell anemia using a modified gamma globin lentivirus vector and reduced intensity conditioning transplant shows promising correction of the disease phenotype. Blood 132, 1021 (2018).
Brendel, C. et al. Lineage-specific BCL11A knockdown circumvents toxicities and reverses sickle phenotype. J. Clin. Invest. 126, 3868–3878 (2016).
Esrick E. B. et al. Validation of BCL11A as therapeutic target in sickle cell disease: results from the adult cohort of a pilot/feasibility gene therapy trial inducing sustained expression of fetal hemoglobin using post-transcriptional gene silencing. Blood 134 (Suppl. 2), LBA-5 (2019).
Garcia-Gomez, M. et al. Safe and efficient gene therapy for pyruvate kinase deficiency. Mol. Ther. 24, 1187–1198 (2016).
Roman-Rodriguez, F. J. et al. NHEJ-mediated repair of CRISPR-Cas9-induced DNA breaks efficiently corrects mutations in HSPCs from patients with Fanconi anemia. Cell Stem Cell 25, 607–621.e7 (2019).
Bellettato, C. M. et al. Inborn errors of metabolism involving complex molecules: lysosomal and peroxisomal storage diseases. Pediatr. Clin. North Am. 65, 353–373 (2018).
Orchard, P. J. & Wagner, J. E. Leukodystrophy and gene therapy with a dimmer switch. N. Engl. J. Med. 364, 572–573 (2011).
Krivit, W. & Whitley, C. B. Bone marrow transplantation for genetic diseases. N. Engl. J. Med. 316, 1085–1087 (1987).
Bergner, C. G. et al. Microglia damage precedes major myelin breakdown in X-linked adrenoleukodystrophy and metachromatic leukodystrophy. Glia 67, 1196–1209 (2019).
Biffi, A. Hematopoietic gene therapies for metabolic and neurologic diseases. Hematol. Oncol. Clin. North Am. 31, 869–881 (2017).
Moser, H. W. et al. X-Linked adrenoleukodystrophy: overview and prognosis as a function of age and brain magnetic resonance imaging abnormality. A study involving 372 patients. Neuropediatrics 31, 227–239 (2000).
Krivit, W., Sung, J. H., Shapiro, E. G. & Lockman, L. A. Microglia: the effector cell for reconstitution of the central nervous system following bone marrow transplantation for lysosomal and peroxisomal storage diseases. Cell Transplant. 4, 385–392 (1995).
Taylor, M. et al. Hematopoietic stem cell transplantation for mucopolysaccharidoses: past, present, and future. Biol. Blood Marrow Transplant. 25, e226–e246 (2019).
Yamada, T. et al. Therapeutic effects of normal cells on ABCD1 deficient cells in vitro and hematopoietic cell transplantation in the X-ALD mouse model. J. Neurolog. Sci. 218, 91–97 (2004).
Fumagalli, F. et al. Lentiviral (LV) hematopoietic stem cell gene therapy (HSC-GT) for metachromatic leukodystrophy (MLD). J. Inherit. Metab. Dis. 42, 7 (2019).
Platt, F. M., d’Azzo, A., Davidson, B. L., Neufeld, E. F. & Tifft, C. J. Lysosomal storage diseases. Nat. Rev. Dis. Primers 4, 27 (2018).
Visigalli, I. et al. Gene therapy augments the efficacy of hematopoietic cell transplantation and fully corrects mucopolysaccharidosis type I phenotype in the mouse model. Blood 116, 5130–5139 (2010).
Sergijenko, A. et al. Myeloid/Microglial driven autologous hematopoietic stem cell gene therapy corrects a neuronopathic lysosomal disease. Mol. Ther. 21, 1938–1949 (2013).
Gentner, B. Extensive metabolic correction of Hurler disease by hematopoietic stem cell-based gene therapy: preliminary results from a phase I/II trial. Blood 134, 607 (2019).
Meneghini, V. et al. Pervasive supply of therapeutic lysosomal enzymes in the CNS of normal and Krabbe-affected non-human primates by intracerebral lentiviral gene therapy. EMBO Mol. Med. 8, 489–510 (2016).
Marco, S., Haurigot, V. & Bosch, F. In vivo gene therapy for mucopolysaccharidosis type III (Sanfilippo syndrome): a new treatment horizon. Hum. Gene Ther. 30, 1211–1221 (2019).
Capotondo, A. et al. Intracerebroventricular delivery of hematopoietic progenitors results in rapid and robust engraftment of microglia-like cells. Sci. Adv. 3, e1701211 (2017).
Peake, R. W. et al. Newborn screening for lysosomal storage disorders: quo vadis? Clin. Chem. 62, 1430–1438 (2016).
Ben Nasr, M. et al. PD-L1 genetic overexpression or pharmacological restoration in hematopoietic stem and progenitor cells reverses autoimmune diabetes. Sci. Transl Med. 9, eaam7543 (2017).
Escobar, G. et al. Interferon gene therapy reprograms the leukemia microenvironment inducing protective immunity to multiple tumor antigens. Nat. Commun. 9, 2896 (2018).
Richter, M. et al. In vivo hematopoietic stem cell transduction. Hematol. Oncol. Clin. North Am. 31, 771–785 (2017).
Tsai, S. Q. et al. GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases. Nat. Biotechnol. 33, 187–197 (2015).
Tebas, P. et al. Gene editing of CCR5 in autologous CD4 T cells of persons infected with HIV. N. Engl. J. Med. 370, 901–910 (2014).
June, C. H. & Sadelain, M. Chimeric antigen receptor therapy. N. Engl. J. Med. 379, 64–73 (2018).
Ledford, H. Quest to use CRISPR against disease gains ground. Nature 577, 156 (2020).
De Luca, M. et al. Advances in stem cell research and therapeutic development. Nat. Cell Biol. 21, 801–811 (2019).
Poletti, V. & Mavilio, F. Interactions between retroviruses and the host cell genome. Mol. Ther. Methods Clin. D. 8, 31–41 (2018).
Wienert, B., Martyn, G. E., Funnell, A. P., Quinlan, K. G. & Crossley, M. Wake-up sleepy gene: reactivating fetal globin for β-haemoglobinopathies. Trends Genet. 34, 927–940 (2018).
Acknowledgements
The authors thank Fondazione Telethon and the European Commission (SCIDNET, E-Rare EUROCID) for support. A.A. is the recipient of the Else Kröner Fresenius Prize for Medical Research 2020. A.J.T. is supported by the Wellcome Trust and the UK National Institute for Health Research biomedical research centres at Great Ormond Street Hospital for Children NHS Foundation Trust and University College London. A.A. and A.T. are members of the European Reference Network for Rare Immunodeficiency, Autoinflammatory and Autoimmune Diseases (project ID no. 739543) and the Inborn Error Working Party of EBMT. The authors thank F. Tucci for her help with the preparation of Table 1 and M. E. Bernardo, F. Fumagalli, A. Gritti and S. Scala, for their critical review of the figures and manuscript.
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The San Raffaele Telethon Institute for Gene Therapy is a joint venture between Fondazione Telethon and Ospedale San Raffaele. Gene therapies for adenosine deaminase-deficient severe combined immunodeficiency, Wiskott–Aldrich syndrome, metachromatic leukodystrophy, β-thalassaemia and mucopolysaccharidosis type I developed at the San Raffaele Telethon Institute for Gene Therapy were licensed to Orchard Therapeutics in 2018 and 2019. A.A. is the principal investigator in the above-mentioned clinical trials. A.J.T has equity in and is on the scientific advisory board for Orchard Therapeutics and receives consultancy payments from Rocket Pharmaceuticals.
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Related links
New gene therapy to treat rare genetic disorder metachromatic leukodystrophy: https://www.ema.europa.eu/en/news/new-gene-therapy-treat-rare-genetic-disorder-metachromatic-leukodystrophy
Potential adverse reaction to gene therapy in a patient treated with Strimvelis for the treatment of ADA-SCID: https://www.telethon.it/en/stories-and-news/news/from-telethonfoundation/potential-adverse-event-after-gene-therapy-for-ada-scid
Glossary
- Allogeneic
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Relating to or denoting that the source of cells, tissues or organs for transplant is from an individual genetically different from the recipient.
- Primary immunodeficiencies
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(PIDs). Mendelian genetic disorders caused by defects in the development and/or function of immune cells. Currently, more than 300 genes have been identified that cause adaptive and/or innate immune cell defects.
- Chronic granulomatous disease
-
(CGD). A disease caused by dysfunction of the phagocyte NADPH oxidase, a membrane-bound enzyme complex required for effective killing of bacteria and fungi.
- Leukapheresis
-
A procedure that separates white blood cells, including haematopoietic stem cells, from the blood. White cells are collected from the donor and other blood fractions are returned to the circulation.
- Mobilizing agents
-
Drugs that induce transient mobilization of haematopoietic stem cells from the bone marrow to the circulation so that they can be collected by leukapheresis.
- Myeloablative conditioning
-
High-dose chemotherapy that destroys haematopoietic cells in the bone marrow and severely reduces the number of blood cells. Usually followed by haematopoietic stem and progenitor cell transplantation or gene therapy to rebuild the bone marrow.
- Oligoclonality
-
A quality associated with clones derived from one or a few cells or molecules.
- Iron chelation therapy
-
Pharmacological depletion of toxic iron accumulation in organs.
- Stress erythropoiesis
-
The rapid development of new red blood cells stimulated in response to acute anaemia.
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Ferrari, G., Thrasher, A.J. & Aiuti, A. Gene therapy using haematopoietic stem and progenitor cells. Nat Rev Genet 22, 216–234 (2021). https://doi.org/10.1038/s41576-020-00298-5
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DOI: https://doi.org/10.1038/s41576-020-00298-5
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