Abstract
Upon activation, tumor necrosis factor alpha (TNF-α) receptor can engage apoptotic or survival pathways. Inhibition of macromolecular synthesis is known to sensitize cells to TNF-α-induced cell death. It is believed that this sensitization is due to the transcriptional blockade of genes regulated by NF-κB. Nevertheless, such evidence has remained elusive in the nervous system. Here, we show that TNF-α cannot normally induce apoptosis in PC12 cells or cortical neurons. However, cells treated with Actinomycin D (ActD) become susceptible to TNF-α-induced cell death through the activation of caspase-8, generation of tBid and activation of caspase-9 and -3. Analysis of several proteins involved in TNF-α receptor signaling showed no significant downregulation of NF-κB target genes, such as IAPs or FLIP, under such conditions. However, Bcl-xL protein levels, but not those of Bcl-2, Bax and Bak, are reduced by ActD or TNF-α/ActD treatments. Moreover, Bcl-xL overexpression fully protects cells against TNF-α/ActD-induced cell death. When endogenous levels of Bcl-xL are specifically downregulated by lentiviral-based RNAi, cells no longer require ActD to be sensitive to TNF-α-triggered apoptosis. Furthermore, Bcl-xL downregulation does not affect TNF-α-mediated NF-κB activation. Altogether, our results demonstrate that Bcl-xL, and not Bcl-2, FLIP or IAPs, acts as the endogenous regulator of neuronal resistance/sensitivity to TNF-α-induced apoptosis in an NF-κB-independent manner.
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Introduction
Tumor necrosis factor alpha (TNF-α) is widely expressed in most tissues, including the nervous system. Under normal conditions, TNF-α is expressed at low levels in neurons in the Central Nervous System (CNS) 1. However, its expression increases drastically after different pathological stimuli such as neural injury, ischemia or infection. The main source of TNF-α is the resident glia that becomes activated as part of the innate inflammatory response of the CNS 2. TNF-α appears to be one of the most important mediators of the deleterious effects observed in several pathologies in the nervous system such as axotomy 3, Parkinson- 4, 5 or stroke-induced damage 6 and spinal cord injury 7.
TNF-α can induce either cell death or cell survival and proliferation 8. When TNF-α binds to its receptor TNFR1, an NF-κB-activating complex (complex I), composed of TRADD, RIPK and TRAF2, is formed 9. Subsequently, TRADD dissociates from the receptor and recruits FADD and caspase-8, forming complex II. TNF-α induces cell survival in cells that strongly activate NF-κB, whereas apoptosis occurs when NF-κB is poorly activated. Therefore, it is well established that TNF-α-induced apoptosis requires simultaneous NF-κB inhibition 10, 11, 12. Inhibition of NF-κB can be achieved by blocking RNA or protein synthesis using Actinomycin D (ActD) or cycloheximide (CHX), respectively 13, 14, 15. However, these experimental approaches are not specific for NF-κB, making the results difficult to interpret. Several NF-κB target genes such as c-FLIPL, c-IAP1/2 and XIAP have been proposed to play protective roles, inhibiting apoptosis via different mechanisms. Several reports have shown that ActD and CHX also reduce c-FLIPL and c-IAP levels 14, 15. Bcl-2, Bcl-xL or Mcl-1 overexpression has also been shown to protect cells from TNF-α-induced cell death 16, 17, 18, 19. Nonetheless, there are no conclusive reports concerning the relevance of these proteins as endogenous inhibitors of TNFR-triggered apoptosis.
Here, we demonstrate that Bcl-xL levels are a crucial determinant of resistance or sensitivity to TNF-α-induced cell death in neurons. TNF-α can only induce apoptosis in PC12 cells or cortical neurons when macromolecular synthesis is blocked. In these cells, ActD specifically down-regulates Bcl-xL without affecting FLIP or IAP levels. We also show that inhibiting NF-κB does not modify Bcl-xL levels. When endogenous Bcl-xL levels are downregulated by RNAi, TNF-α can induce apoptosis without the further requirement of ActD and despite the simultaneous activation of the NF-κB pathway. Together, our results suggest that Bcl-xL is part of an NF-κB-independent pathway that protects cells from TNF-α-induced apoptosis.
Results
Inhibition of macromolecular synthesis renders PC12 cells and primary cortical neurons sensitive to the cytotoxic activity of TNF-α
It is well-documented that some cell types are resistant to the cytotoxic effects of TNF-α. However, many cell types become sensitive to TNF-α when cells are treated with ActD to inhibit RNA synthesis 10, 11. The molecular mechanisms underlying this phenomenon remain poorly understood. As shown in Figure 1A, the addition of TNF-α did not impair the normal proliferation rate of PC12 cells compared with their untreated controls. To render them sensitive to TNF-α-induced cytotoxicity, cells were treated with TNF-α in the presence of 1 nM ActD. After 24 h, approximately 20% of the cells died (Figure 1B). Hoechst staining revealed that most of the dying cells displayed a typical apoptotic nuclear morphology characterized by chromatin condensation and shrinkage of the nucleus (Figure 1B). Apoptotic nuclear characteristics were further confirmed by TUNEL assay (Figure 1B). However, the addition of neither ActD nor TNF-α alone had any effects on cell viability (Figure 1A and 1B), although ActD impaired the proliferation of PC12 cells (Figure 1A). Co-treatment with TNF-α and ActD (TNF-α/ActD) induced a nearly 3-fold increase in caspase-8-like (IETDase) activity compared to untreated PC12 cells or PC12 cells treated with ActD or TNF-α alone. When 50 μM z-IETD-fmk was included in the culture media, caspase-8-like activation was completely prevented (Figure 1C). In addition, the processing of Bid into its caspase-8-specific truncated form, tBid, occurred only when cells were co-treated with TNF-α/ActD (Figure 1D). Figure 1D demonstrates the involvement of the intrinsic apoptotic pathway through the processing of pro-caspase-9 into its p38 and p17 active fragments and pro-caspase-3 into its large p17 active form. Activation of caspase-3 was confirmed by measuring DEVDase activity (Figure 1E). This activity, as well as the resulting apoptosis, could be fully inhibited by z-VAD-fmk (Figure 1E and data not shown).
Results similar to those described for PC12 cells were also obtained using primary neurons. Embryonic cortical neurons were resistant to TNF-α-induced apoptosis, but co-treatment with TNF-α/ActD induced a significant increase in cell death (P < 0.01), as well as the processing and activation of procaspase-9 and procaspase-3 (Figure 1F). We also observed that neurons treated with TNF-α/ActD displayed caspase-8-like and caspase-3-like activities as assessed by measuring their enzymatic activities using the fluorogenic substrates IETD-afc and DEVD-afc, respectively (Figure 1G and 1H).
Inhibition of macromolecular synthesis does not modify the levels of death-inducing signaling complex (DISC) adaptors or inhibitors
ActD-mediated sensitization to TNF-α-induced cell death could be due to an imbalance between the “survival complex” (integrated by TNF-α/TNF-R1/TRADD/TRAF-2/RIPK) and the “death complex” (formed by TNF-α/TNF-R1/TRADD/FADD) 8. To ascertain whether ActD modifies the levels of the molecular adaptors mentioned above, we generated western blots of PC12 cell lysates using specific antibodies against TNF-R1, TRADD, FADD, TRAF-2 and RIPK. As shown in Figure 2A, none of these proteins displayed significant changes after treatment with TNF-α, ActD or TNF-α/ActD. Since there are no good antibodies against the rat variants of TNF-R2 and caspase-8, we also checked the expression of their miRNAs by semi-quantitative RT-PCR. Whereas TNF-R1 was present in PC12 cells (Figure 2A), we failed to detect TNF-R2 transcripts (Figure 2B and 20). Caspase-8 mRNA levels remained unaltered by the experimental treatments (Figure 2B). As observed in PC12 cells, ActD did not modify levels of DISC components in primary cortical neurons (Figure 2A and 2B).
FLIPL and IAP levels have been proposed to be critical for regulating sensitivity to or resistance against TNF-α in several cellular models 21, 22. Both cIAP1 and cIAP2, but not FLIP or XIAP, levels increased upon TNF-α treatment in a time-dependent manner in PC12 cells (Figure 2C–2E). In addition, cIAP1, cIAP2 and XIAP protein levels decreased upon treatment with ActD, but those of FLIP remained unaltered. Co-treatment with TNF-α and ActD did not cause significant changes in cIAP1, cIAP2 and FLIPL levels (Figure 2C and 2D), but caused a decrease in XIAP protein levels (Figure 2E). To ascertain whether decreased levels of some of these proteins could sensitize PC12 cells to TNF-α-induced cell death, we performed RNAi experiments. As shown in Figure 2F, knock-down of c-FLIP, XIAP or cIAP2 did not influence cell sensitivity to TNF-α. Together, these results suggest that the critical regulatory step is downstream of the DISC.
Inhibition of macromolecular synthesis decreases Bcl-xL protein levels
Since Bcl-2 family members modulate cell death signals by affecting mitochondrial integrity, we wanted to know whether ActD treatment affects the levels of the anti-apoptotic proteins Bcl-2 and Bcl-xL or the pro-apoptotic proteins Bax and Bak. Although untreated PC12 cells did not express Bcl-2 (data not shown and 23), the other three proteins were present in untreated PC12 cells (Figure 3A). Treatment with TNF-α for 12, 24 or 48 h did not modify Bcl-xL, Bax or Bak protein levels. However, treatment of PC12 cells with 1 nM ActD downregulated Bcl-xL without altering Bax or Bak protein levels (Figure 3A). Bcl-xL levels also decreased without any evident changes in Bax or Bak levels in cortical neurons after ActD treatment (Figure 3B). Unlike PC12 cells, cortical neurons express Bcl-2, but the expression of Bcl-2 was not affected by ActD treatment. In a more detailed time-course, we observed that Bcl-xL levels diminished between 6 and 12 h after ActD treatment in PC12 cells (Figure 3C). A maximal decrease in Bcl-xL expression was achieved after 48 h when the protein level was 40% lower than that observed in control cells (Figure 3C). To determine whether TNF-α/ActD-induced cell death correlated with the decrease in Bcl-xL levels, we quantified apoptosis by assessing apoptotic nuclear morphology by Hoechst staining after 6, 12, 24 and 48 h of treatment. As shown in Figure 3D, PC12 cells became sensitive to apoptosis between 12 and 24 h after TNF-α/ActD co-treatment. These results indicate that RNA synthesis inhibition by ActD induces a decrease in Bcl-xL protein levels that precedes sensitization to TNF-α-induced cell death.
Overexpression of Bcl-xL blocks TNF-α/ActD-induced cell death in PC12 cells and cortical neurons
To confirm that Bcl-xL confers resistance against TNF-α/ActD-induced apoptosis, PC12 cells were infected with a lentivirus carrying a eukaryotic expression construct containing the human bcl-xL gene (PC12-Bcl-xL). After 72 h of infection, cells were treated with ActD and Bcl-xL expression levels were monitored. As shown in Figure 4A, at the beginning of ActD treatment (72 h post-infection), PC12 cells infected with the Bcl-xL construct expressed nearly twice as much Bcl-xL as cells infected with an empty vector. ActD treatment induced a progressive decrease in Bcl-xL levels in both control and Bcl-xL-infected cells (Figure 4A). However, even after 24 h of ActD treatment, PC12-Bcl-xL cells maintained Bcl-xL expression levels that were higher than empty vector-infected PC12 cells (Figure 4A). In agreement with the results described above, Bcl-xL overexpressing cells were resistant to death induced by TNF-α/ActD treatment. Bcl-xL overexpression was as efficient as the caspase inhibitors z-IETD-fmk or z-VAD-fmk in preventing apoptosis (Figure 4B). Protection against cell death in PC12-Bcl-xL cells correlated with the inhibition of caspase-3 and -9 processing (Figure 4C).
When similar analyses were performed using cortical neurons, the results were comparable to those obtained for PC12 cells. Cortical neurons were infected with lentivirus carrying the construct expressing human Bcl-xL at the beginning of the culturing process and were cultured for 6 days. They were then treated with TNF-α, and cell death was assessed 24 h later by counting apoptotic nuclei using Hoechst staining. Increased Bcl-xL expression completely prevented death induced by simultaneous treatment with TNF-α and ActD (Figure 5A). Bcl-xL overexpression also prevented caspase activation as assessed by western blot analysis (Figure 5B), by measuring IETDase and DEVDase activities (Figure 5C and 5D) or by immunostaining for the active form of caspase-3 (Figure 5E).
Decreased endogenous Bcl-xL levels render PC12 cells and cortical neurons sensitive to TNF-α without affecting NF-κB activity
To further assess the relevance of Bcl-xL in resistance against TNF-α-mediated cytotoxicity, we carried out lentiviral-based knock-down of Bcl-xL. As shown in Figure 6A, PC12 cells infected with lentivirus carrying a short hairpin sequence targeting rat/mouse Bcl-xL (shBcl-xL) exhibited a strong reduction in Bcl-xL protein levels 72 h after infection when compared with cells infected by lentivirus carrying a scrambled sequence (shScr). PC12 cells infected with shScr or shBcl-xL were treated with TNF-α/ActD, TNF-α or ActD alone for 24 h. As expected, cells containing the scrambled sequence only died when they were co-treated with TNF-α and ActD. Interestingly, PC12 cells infected with the shBcl-xL construct were sensitive to the pro-apoptotic activity of TNF-α alone, and additional treatment with ActD did not further increase the number of apoptotic nuclei (Figure 6B). To confirm the specificity of the RNAi against Bcl-xL and to rule out the possibility that non-specific targets could be responsible for mediating the sensitization of PC12 cells to TNF-α triggering, we carried out complementation experiments (Figure 6C). As shown in Figure 6D, infection with shBcl-xL did not sensitize PC12 cells stably expressing human Bcl-xL (PC12-hBcl-xL) to TNF-α cell death. Figure 6E demonstrates that the shBcl-xL lentivirus efficiently reduced Bcl-xL levels in PC12 cells transfected with an empty (Neo) vector but not in PC12-hBcl-xL cells. Moreover, Figure 6E shows that shBcl-xL was efficient in reducing the levels of rat bcl-x mRNA, but not that of human bcl-x mRNA. These data confirm the specificity of this RNAi technology since the rat/mouse shBcl-xL target sequence and the orthologous human sequence (GeneBankTM NM_138578) only differ by 3 nucleotides (Figure 6C).
To determine whether low levels of Bcl-xL sensitize PC12 cells to TNF-α-induced cell death through the intrinsic apoptotic pathway, we assessed the activation of caspase-9 and caspase-3. PC12 cells transiently infected with shBcl-xL and treated with TNF-α were able to process and activate pro-caspase-9 and pro-caspase-3 (Figure 7A). In contrast, shScr-infected PC12 cells were unable to activate these caspases (Figure 7A). In agreement with these results, TNF-α induced DEVD-like activity in shBcl-xL-infected cells (Figure 7B). This activity can be completely rescued when cells were pre-treated with the caspase-8 inhibitor z-IETD-fmk (Figure 7B). Treatment with z-IETD-fmk or z-VAD-fmk also protected shBcl-xL-infected cells from TNF-α-induced apoptosis (Figure 7C). We also carried out similar knock-down experiments in isolated mouse cortical neurons to confirm that Bcl-xL is the key molecule that mediates resistance to TNF-α-mediated cytotoxicity. As shown in Figure 7D, lentivirus carrying the shBcl-xL construct was highly efficient in knocking down endogenous Bcl-xL protein levels in cortical neurons when compared with the scrambled sequence. Additionally, cortical neurons infected with shBcl-xL became sensitive to TNF-α, showing a 5-fold increase in the number of apoptotic cells when compared with shScr-infected neurons (Figure 7E). Cell death induced by TNF-α in cortical neurons containing shBcl-xL could be blocked by z-IETD-fmk (Figure 7E), demonstrating the involvement of a caspase-8-like activity. Pro-caspase-9 and pro-caspase-3 processing in TNF-α-treated cells was detected (Figure 7D), providing further evidence for the involvement of caspase-9 and caspase-3. Caspase-3 activation was also detected by measuring DEVDase activity (Figure 7F). Together, these results suggest that Bcl-xL is the key molecule preventing TNF-α-induced apoptotic cell death in cortical neurons.
The NF-κB transcription factor has been postulated to be the key molecule mediating the anti-apoptotic response triggered by activation of TNF-R1. Indeed, it has been reported that disruption of the NF-κB pathway sensitizes cells to TNF-α-induced apoptosis 10, 11. Because the downregulation of Bcl-xL sensitized PC12 cells to TNF-α, we wanted to assess whether this effect was due to changes in NF-κB activation status. As shown in Figure 8A, knock-down of Bcl-xL did not impair the ability of TNF-α to induce nuclear translocation of RelA/p65, and NF-κB activity was not altered by shBcl-xL (Figure 8B). We also wanted to confirm that endogenous NF-κB function was not impaired in shBcl-xL-PC12 cells treated with TNF-α. For this reason, we assessed the protein levels of cIAP1, a known target gene of NF-κB. As shown in Figure 8C, Bcl-xL knock-down did not impair cIAP1 upregulation upon TNF-α treatment. In addition, blocking NF-κB activity via transfection of an IκBα super-repressor (SR-IκBα) (Figure 8D) 24 did not alter Bcl-xL expression levels upon TNF-α treatment (Figure 8E), even though cell death occurred efficiently (Figure 8F). Altogether, our results point toward two different mechanisms that regulate cell sensitivity to apoptosis upon TNF-α treatment: one controlled by NF-κB status and the other controlled by Bcl-xL protein levels.
Discussion
Cells treated with TNF-α usually require the inhibition of macromolecular synthesis in order to undergo apoptotic cell death 15, 25. When metabolic inhibitors such as ActD are present in combination with TNF-α, caspase-8 becomes activated and induces apoptotic cell death. To explain this sensitizing effect, the inhibition of the synthesis of short-lived repressors of TNFR function has been widely postulated 25. We demonstrate here that ActD renders PC12 cells and primary mouse cortical neurons susceptible to the cytotoxic effects of TNF-α, indicating that an initial sensitization step is required. We have also found that the intracellular levels of Bcl-xL, and not those of FLIP or IAPs, determine resistance or sensitivity to TNF-α-triggered cell death, both in cortical neurons and in PC12 cells.
Two different types of intracellular pathways are activated by TNFRs: one promoting cell death and the other involved in cell survival. The pathways leading to cell survival mainly depend on NF-κB activation 11. NF-κB controls the transcription of several genes that have been implicated in the inhibition of cell death via the TNF-α-mediated pro-apoptotic signaling pathway. Inhibition of NF-κB transcriptional activity allows for the induction of cell death by TNF-α 10, 11. We demonstrate here that the specific reduction of Bcl-xL protein levels renders cells sensitive to TNF-α-induced apoptosis. We provide evidence that NF-κB is fully functional in our system after TNF-α treatment despite reduced Bcl-xL protein levels. Indeed, TNF-α can induce apoptosis when Bcl-xL levels are reduced, even though NF-κB remains active. Therefore, the presence or absence of Bcl-xL is critical for the decision of a cell whether to survive or die after exposure to TNF-α. Additionally, we found that when NF-κB activity is specifically inhibited by overexpression of a non-degradable form of IκB-α cells become sensitive to TNF-α-induced cell death without altering Bcl-xL levels, suggesting that Bcl-xL is not a target gene of the NF-κB pathway (Figure 8E). These data strongly support the idea that at least two different pro-survival signals co-exist in the TNF-α/TNFR signaling pathway, one of which is NF-κB-dependent and the other of which is NF-κB-independent but depends on Bcl-xL levels.
It has been reported that the sensitization of some cell types to TNF-α-induced, NF-κB-dependent cell death is due to the degradation of c-FLIPL 26. However, c-FLIPL protein levels did not decrease after ActD treatment in our cellular models. In addition, lentivirus-based knock-down of FLIP did not render cells sensitive to the pro-apoptotic action of TNF-α. It has also recently been suggested that TNF-α-dependent IAP upregulation could protect endothelial cells against the pro-apoptotic action of TNF-α 22, 27. Our results demonstrate that TNF-α significantly upregulates and that ActD decreases c-IAP-1 and -2 protein levels. However, the cytotoxic combination of TNF-α and ActD did not modify the levels of these proteins as compared to untreated control cells. This finding implies that ActD impedes de novo TNF-α-mediated c-IAPs transcription, raising the hypothesis that the amount of c-IAPs present under these conditions could be insufficient to protect cells against TNF-α-triggered apoptosis. Nevertheless, the specific knock-down of c-IAP-1 (Supplementary information, Figure S1) or c-IAP-2 did not confer sensitivity to apoptosis induced by TNF-α treatment. Similarly, even though XIAP protein levels decreased upon ActD and TNF-α/ActD treatment, knock-down of XIAP did not confer sensitivity to TNF-α-mediated apoptosis. These data strongly indicate that neither FLIP nor IAPs are the key regulators of sensitization to TNF-α-mediated cell death, at least in our cellular models.
It has been recently shown that small molecules mimicking Smac/Diablo antagonism towards IAPs potentiate, or even induce, cell death in multiple cancer cell lines 28, 29, 30. Regarding resistance or sensitivity to Smac/Diablo mimetics, we can expect three different classes of cancer cells. The first class is sensitive to Smac/Diablo mimetics. The second one does not respond to Smac/Diablo treatment alone, but becomes sensitive to TNF-α-induced apoptosis with this treatment. Finally, the third class may represent cancer cells that are resistant to Smac/Diablo mimetics and TNF-α co-treatment 31. Intriguingly, cIAP degradation occurs regardless of the type of cancer cell or of sensitivity to Smac/Diablo mimetics upon mimetic treatment 29. These data suggest that there should be other cIAP-independent mechanisms controlling the switch between cell survival and cell death in the TNF-α signaling cascade. Our data point to the mitochondria, and more specifically to Bcl-xL protein levels, as an additional control in this pathway. In any case, it would be worthwhile to address the impact of Smac/Diablo mimetics on neuronal sensitivity to TNF-α.
A relevant finding reported here is that Bcl-2 protein levels remain unchanged after ActD treatment in cortical neurons. Although the functions of Bcl-2 family proteins appear similar, increasing evidence suggests that the pro-survival activities of Bcl-2 and Bcl-xL are differentially regulated. In this sense, Bcl-2-inhibitable steps can normally be bypassed by the death receptor-mediated apoptotic pathway 32. In contrast, Bcl-xL is thought to be a more potent suppressor of death receptor-induced cell death 33. Our results demonstrate that only Bcl-xL levels were efficiently lowered by ActD treatment in cortical neurons, suggesting that Bcl-xL protein, but not Bcl-2, must be degraded to make cells susceptible to TNF-α's pro-apoptotic activity. In agreement with this, knock-down of Bcl-xL in cortical neurons is an efficient way to induce TNF-α-mediated cell death. In fact, it has been reported that after nerve trauma Bcl-xL expression is lost in axotomized neurons of the spinal ganglia 34. Since TNF-α levels are drastically increased by resident activated glia in brain tissue after different pathological stimuli such as neural injury, ischemia or infection 2, we hypothesize that neurons with low Bcl-xL levels become more sensitive to the cytotoxic activity of glial-derived TNF-α.
The physiological relevance of Bcl-xL in the nervous system has been demonstrated by the generation of knock-out mice for bcl-x. In fact, the genetic ablation of bcl-x revealed that embryos die around day 13–13.5 due, in part, to extensive apoptotic cell death as evidenced in postmitotic immature neurons of the developing brain, spinal cord and dorsal root ganglia. These results confirm that Bcl-x supports the viability of immature cells during the embryonic development of the nervous system 35. Moreover, no major alterations in the CNS were found in bcl-2 knock-out mice, although some populations of neurons in the PNS were partially reduced 36, 37. Our study demonstrates for the first time that Bcl-xL, but not Bcl-2, is the key element in the resistance of primary neurons to TNF-α-triggered apoptosis.
Bcl-xL expression is maintained or even upregulated during the development of the nervous system and in adulthood. However, Bcl-2 becomes quickly downregulated in almost every neuronal population during development 38, 39, 40. Since Bax expression is also maintained in mature neurons 41, our data support the idea that the Bcl-xL/Bax ratio might be one of the most important regulators of the response of neurons to TNF-α 40.
Materials and Methods
Reagents
All chemicals were obtained from Sigma-Aldrich (St Louis, MO) unless otherwise indicated. Human TNF-α (Sigma) was used at 100 ng/ml and ActD was used at 1 nM. The caspase inhibitors z-IETD-fmk and z-VAD-fmk and the fluorogenic caspase substrates Ac-IETD-afc and Ac-DEVD-afc were from Calbiochem (San Diego, CA). Antibodies against Bcl-xL, FADD, RIP and panERK were purchased from BD Biosciences (San Diego, CA). Bcl-2 antibody was from Neomarkers (Westinghouse Drive Fremont, CA). Antibodies against Bax, cleaved caspase-3, procaspase-9 and cleaved caspase-9 were from Cell Signaling Technology (Beverly, MA). The anti-Bak antibody was from Biocarta (San Diego, CA). Antibodies against cIAP1, cIAP2, TNF-R1, TRAF-2 and TRADD were from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies against FLIPL and XIAP were from Stressgen (Ann Arbor, MI). The anti-FLIPS antibody was from Alexis (Lausen, Switzerland). The anti-Bid antibody was from R&D Systems (Benicia, CA).
Cell culture
PC12 cells were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 6% heat-inactivated fetal bovine serum (FBS), 6% heat-inactivated horse serum (Gibco Invitrogen Corp., Paisley, UK), 10 mM HEPES, 20 units/ml penicillin and 20 μg/ml streptomycin. Primary cortical neurons were dissected from E15 mouse embryos into ice-cold HBSS (Invitrogen), trypsinized for 8 min at 37 °C and dissociated with a fire-polished Pasteur pipette. The resulting cells were plated at 7.5 × 104 cells/cm2 in 10 μg/ml poly-D-lysine-coated culture plates and cultured in MEM supplemented with 10% FBS for 4 h. The medium was then replaced with serum-free MEM supplemented with B27 and N2 (Gibco), and neurons were maintained for 6 days in vitro (DIV) before treatment. Cultures were maintained at 37 °C in a humidified atmosphere of 95% air and 5% CO2.
Plasmids
For transient overexpression, the cDNA for human Bcl-xL was extracted from pcDNA3 (Invitrogen) 42 and subcloned into pWPI 43, 44. PC12 cells stably transfected with IκBα super-repressor (SR-IκBα)-pcDNA3 or empty-pcDNA3 vectors were obtained as described by Sole et al. 45. For RNAi experiments, constructs were generated in pSUPER.retro.puro (OligoEngine, Seattle, WA) using specific oligonucleotides targeting Bcl-xL, c-FLIP or cIAP2 sequences as follows: shBcl-xL GAT TGC AAG TTG GAT GGC C; shFLIP-F.1 GGT TCC GAT CAG TTG AAT T; shFLIP-F.2 CAC CTT GTT TCC GAT TAT A; shXIAP-X.1 AGA ATC CTA TGG TGC AAG A; shXIAP-X.2 GGT GCA AGA AGC TAT ACG; shIAP2-I2.1 CAC GGA GAA GGC CAG ATT A and shIAP2-I2.2 GTT CGT TGG CCA AGT TCA A. The control scrambled (shScr) sequence was GGT CCC TTT CTC TGT AGT C. Adaptors to clone the oligonucleotides into the BglII/HindIII sites of pSUPER.retro.puro were added as required. Oligonucleotides were obtained from Sigma-Aldrich. Lentiviral constructs were generated by digesting pSUPER-sh with EcoRI and ClaI to replace the H1 promoter with the H1-shRNA cassette in pLVTHM. pWPI, pLVTHM, pSPAX2 and pMD2G were kindly provided by Dr Trono (Université de Genève, Geneva, Switzerland).
Production of lentiviral particles and cell transduction
Lentiviruses were propagated in HEK293T cells, using methods described previously 43, 44. Using the calcium phosphate method 46, 20 μg of pLVTHM-Bcl-xL, 13 μg of pSPAX2 and 7 μg of pM2G were transfected. Cells were allowed to produce lentivirus for 48 h. Then the medium was centrifuged at 1 200 × g for 5 min, and the supernatant was filtered using a 45 μm filter. Lentivirus was concentrated at 50 000 × g for 90 min and resuspended in 20 μl phosphate-buffered saline (PBS) containing 1% BSA. Lentiviruses were stored at −80 °C. Biological titers of the viral preparations, expressed as the number of transducing units per ml (TU/ml), were determined by transducing HEK293T cells in limiting dilutions. After 48 h incubation, the percentage of GFP-positive cells was counted and viruses at 5 × 108−1 × 109 TU/ml were used in the experiments.
Lentiviral transduction experiments were carried out as described elsewhere 47. Briefly, cells were seeded in 24-well plates at a density of 105 cells/well. Concentrated lentivirus (2 μl) was added (minimum MOI = 5). After 4 h, the medium was changed and infection efficiency was monitored in each experiment by direct counting of GFP-positive cells. The frequency of infection rose to 90% and 99% for cortical neurons and PC12 cells, respectively. A time-course analysis was performed to test for efficient Bcl-xL overexpression or knock-down. Bcl-xL levels were assessed by western blot and, after 3 days of infection, viruses carrying Bcl-xL or shBcl-xL efficiently induced Bcl-xL protein overexpression or reduced Bcl-xL protein levels, respectively. Selection of pools of cells transfected with human Bcl-xL or empty pcDNA3 42 was performed by adding G-418 to the medium at a final concentration of 500 μg/ml (Gibco).
Western blots
Cells were rinsed in ice-cold PBS (pH 7.2) after stimulation. Cells were lysed with pre-warmed (95 °C) 2% sodium dodecyl sulfate (SDS)-125 mM Tris (pH 6.8) and protein concentration was quantified using a modified Lowry assay (Bio-Rad Dc protein assay, Bio-Rad, Hercules, CA). Cell lysates (25 μg of protein) were separated on SDS/PAGE gels and transferred to a polyvinylidene difluoride (PVDF) Immobilon-P transfer membrane (Millipore, Bedford, MA). After blocking with Tris-buffered saline with Tween-20 containing 5% non-fat dry milk for 1 h at room temperature, the membranes were probed with the appropriated primary antibodies according to the specific requirements indicated by each provider. After 1 h of incubation with the specific peroxidase-conjugated secondary antibodies, the membranes were developed with the EZ-ECL chemiluminescence detection kit (Biological Industries, Kibbutz Beit Haemek, Israel).
Cell viability assays
Cells were seeded in 24-well plates at 5 × 104 cells/well, cultured for 24 h with complete growth medium and treated for the indicated times. Cell viability assays were performed as described previously 48, 49. Briefly, for the Trypan Blue staining exclusion assay, cells were harvested and resuspended in 100 μl of PBS solution. Trypan Blue dye (20 μl; 0.08% final concentration) (Sigma) was added to the cell suspension. Cells were counted using a hemocytometer. For apoptotic nuclear morphology assessment, cells were fixed with 4% paraformaldehyde and stained with 0.05 μg/ml Hoechst 33258 for 30 min at room temperature. Uniformly stained nuclei were scored as healthy, viable cells, whereas condensed or fragmented nuclei were scored as dead cells (apoptotic nuclear morphology type II) 50. Apoptosis was also assessed by TUNEL staining. Cells were fixed in 4% paraformaldehyde/PBS for 60 min at room temperature, permeabilized with 0.1% Triton X-100 in 0.1% sodium citrate for 2 min at 4 °C, and processed following the In situ Cell Death Detection Kit instructions (Roche). At the final step, Hoechst 33258 was added at a final concentration of 0.05 μg/ml. Cell death was quantified using an Olympus microscope equipped with epifluorescence optics.
Caspase activity
After the indicated treatments, cells were rinsed once with PBS and resuspended in lysis buffer containing 25 mM HEPES/NaOH pH 7.5, 10 mM DTT, 5 mM EDTA, 5 mM MgCl2 and 1 mM PMSF for the DEVD-directed activities (caspase-3-like) or 20 mM HEPES/NaOH pH 7.2, 150 mM NaCl, 10 mM DTT and 1 mM PMSF for IETD-like activities (caspase-8-like), both with 1% Triton-X-100. Lysates were cleared by centrifugation at 16 000 × g for 5 min and supernatant proteins were quantified by the Bradford method. Assays were performed using 25 μg of protein for caspase-3-like activities or 100 μg for caspase-8-like activities in the specific lysis buffer supplemented with 10% saccharose and 0.1% CHAPS plus 50 μM of the fluorogenic substrate Ac-DEVD-afc or 150 μM Ac-IETD-afc. Plates were read in a Bio-Tek FL 600 Fluorimeter (Izasa, Spain) using a 360 nm (40 nm bandwidth) excitation filter and a 530 nm (25 nm bandwidth) emission filter.
Active caspase-3 immunofluorescence
Cells were rinsed with PBS at room temperature and fixed in 4% paraformaldehyde/PBS for 30 min. They were then washed twice with PBS and permeabilized and blocked with 3% FBS and 0.1% Triton X-100 in PBS for 60 min. Cells were incubated overnight at 4 °C with rabbit polyclonal anti-cleaved caspase-3 (Cell Signaling) diluted 1:150, rinsed three times with PBS, and incubated with Alexa Fluor 594-conjugated anti-rabbit secondary antibodies (Molecular Probes, Eugene, OR) diluted 1:250 for 1 h at room temperature and protected from light. Finally, cells were stained with 0.05 μg/ml Hoechst 33258 for 30 min 48. Micrographs were obtained using an inverted Olympus XT microscope.
RT-PCR
Cells were treated as described above and mRNA was isolated with the RNeasy® kit according to the manufacturer's instructions (Qiagen, Valencia, CA). Using 150 ng of random hexamers for 1 h at 42 °C, 1 μg of each sample was reverse transcribed by MMLV (Moloney Murine Leukemia Virus) Reverse Transcriptase. Approximately 10 ng of cDNA per sample was amplified by PCR in a Perkin-Elmer thermal cycler 2400 with 200 nM of each primer. The PCR conditions were 94 °C for 30 s, 60 °C for 30 s and 72 °C for 40 s for 28 cycles in 50 mM Tris-HCl pH 9.0, 2.5 mM MgCl2, 15 mM (NH4)2SO4, 0.1% Triton X-100 and 1 unit of DyNAzime-EXT DNA polymerase (Finnzymes, Espoo, Finland). Primers used were rBclX_F (5′-AGA GAG GCT GGC GAT GAG TTT GAA-3′) and rBclX1-2_R (5′-AGC AGA ACA CAG GGA GAA CTT GCT-3′), which amplify a band corresponding to part of the open reading frame (ORF) of rat Bcl-xL (GenBankTM accession NM_001033672); hBclXL-S_F (5′-AGC TGG TGG TTG ACT TTC TCT CCT-3′) and hBclXL_R (5′-AAG CTG CGA TCC GAC TCA CCA ATA-3′), which cover a region containing a portion of the human Bcl-xL ORF (GenBankTM accession NM_138578); rTNF-R2_F (5′-GGC TCA GAT GTG CTG TGC TA-3′) and rTNF-R2_R (5′-TGG TTC CAG ACC TGG GTA-3′), which amplify a band corresponding to part of the ORF of rat TNF-R2 (GenBankTM accession NM_130426); rCasp-8_F (5′-TGC CCT CAA GTT CCT GTG C-3′) and rCasp-8_R (5′-CTT CTG AGA GCT TAA AGA GCA TAA C-3′), which amplify a band corresponding to a part of the ORF of rat caspase-8 (GenBankTM accession NM_022277); and L27_F (5′-AGC TGT CAT CGT GAA GAA-3′) and L27_R (5′-CTT GGC GAT CTT CTT CTT GCC-3′) for the L27 house-keeping ribosomal protein.
Immunofluorescence of RelA/p65 nuclear translocation and NF-κB activity assay
To determine NF-κB status (RelA/p65 nuclear translocation and NF-κB activity) experiments were performed as described previously 45.
Statistical analysis
All experiments were performed at least three times. Values were expressed as means ± SEM. Student's t-tests were used to determine the statistical significance of differences in cell death and caspase activity values. P < 0.01 was considered to be significant.
( Supplementary information is linked to the online version of the paper on the Cell Research website.)
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Acknowledgements
We thank Dr Jose M Lizcano (Institut de Neurociències-UAB, Barcelona, Spain) for helpful discussions, and Arantzazu Rodriguez-Asiain (Institut de Neurociències-UAB, Barcelona, Spain), Isabel Sánchez-López and Roser Pané (Universitat de Lleida, Lleida, Spain) for technical assistance. We also thank Dr Trono (Genève, Switzerland) for providing the lentivirus plasmids. This work was funded by Spanish Government “Ministerio de Sanidad y Consumo” (Redes Temáticas de Investigación Cooperativa and CIBERNED), Spanish Government “Ministerio de Educación y Ciencia” (SAF2007-60287) and Generalitat de Catalunya (Suport als Grups de Recerca Consolidats) to JXC, and by grants from “Ministerio de Educación y Ciencia” SAF2005-05106 (to JR-A) and SAF2005-02197 (to DS). RG and VI-G hold postgraduate fellowships from the DURSI (Generalitat de Catalunya) and Fons Social Europeu. CS and MFS were supported by postgraduate fellowships from the Spanish Government, MEC and FIS, respectively. RSM is under a postdoctoral contract associated with the SAF2007-60287 grant. SR is supported by a postdoctoral contract from the CIBERNED. JZ holds a fellowship from “Ministerio de Educación y Ciencia”. NB is a recipient of a fellowship from the “Gobierno Vasco”. DS is under the Ramon y Cajal Program from the “Ministerio de Educación y Ciencia” (Spain). VJY was supported by a Beatriu de Pinós contract from Generalitat de Catalunya and is presently under the 2006 Ramon y Cajal Program from the “Ministerio de Educación y Ciencia” (Spain), co-financed by the European Social Fund.
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cIAP1 downregulation does not sensitize PC12 cells to TNFα–induced apoptosis. (PDF 73 kb)
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Gozzelino, R., Sole, C., Llecha, N. et al. BCL-XL regulates TNF-α-mediated cell death independently of NF-κB, FLIP and IAPs. Cell Res 18, 1020–1036 (2008). https://doi.org/10.1038/cr.2008.76
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DOI: https://doi.org/10.1038/cr.2008.76
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