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Diodia vein chlorosis virus is a group-1 crinivirus

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Abstract

Members of the family Closteroviridae have emerged as a major problem in agricultural crops in the past two decades. Diodia vein chlorosis virus (DVCV) is an understudied whitefly-transmitted closterovirus. Given the presence of the primary host for the virus in major agricultural production areas in the United States, we characterized the virus at the molecular level, demonstrating that it belongs in the genus Crinivirus, developed detection protocols, evaluated its host range among hosts known to harbor viruses closely related to DVCV, and confirmed transmission by a second whitefly species, Trialeurodes vaporariorum.

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References

  1. Candresse T, Morch MD, Dunez J (1990) Multiple alignment and hierarchical clustering of conserved amino acid sequences in the replication associated proteins of plant RNAviruses. Res Virol 141:315–329

    Article  PubMed  CAS  Google Scholar 

  2. Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36:W465–W469

    Article  PubMed  CAS  Google Scholar 

  3. Dolja VV, Boyko VP, Agranovsky AA, Koonin EV (1991) Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184:79–86

    Article  PubMed  CAS  Google Scholar 

  4. Krogh A, Larsson B, von Heijne B, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol 305:567–580

    Article  PubMed  CAS  Google Scholar 

  5. Larsen RC, Kim KS, Scott HA (1991) Properties and cytopathology of Diodia vein chlorosis virus—a new whitefly-transmitted virus. Phytopathology 81:227–232

    Article  Google Scholar 

  6. Livieratos IC, Eliasco E, Muller G, Olsthoorn RC, Salazar LF, Pleij CW, Coutts RHA (2004) Analysis of the RNAof Potato yellow vein virus: evidence for a genome and conserved 3′-terminal structures among members of the genus Crinivirus. J Gen Virol 85:2065–2075

    Article  PubMed  CAS  Google Scholar 

  7. Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH (2007) CDD: a conserved domain database for interactive domain family analysis. Nucl Acids Res 35:D237–D240

    Article  PubMed  CAS  Google Scholar 

  8. Napuli AJ, Alzhanova DV, Doneanu CE, Barofsky DF, Koonin EV, Dolja VV (2003) The 64-kilodalton capsid protein homolog of Beet yellows virus is required for assembly of virion tails. J Virol 77:2377–2384

    Article  PubMed  CAS  Google Scholar 

  9. Radford AE, Ahles HE, Bell CR (1968) Manual of vascular flora of the Carolinas. University of North Carolina Press, Chapel Hill, p 979

  10. Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyltransferase domain: a hallmark of the ‘Sindbis-like’ supergroup of positive-strand RNAviruses. J Gen Virol 73:2129–2134

    Article  PubMed  CAS  Google Scholar 

  11. Sperschneider J, Datta A (2010) DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model. Nucl Acids Res 38:e103

    Article  PubMed  Google Scholar 

  12. Stewart LR, Medina V, Sudarshana MR, Falk BW (2009) Lettuce infectious yellows virus-encoded P26 induces plasmalemma deposit cytopathology. Virology 388:212–220

    Article  PubMed  CAS  Google Scholar 

  13. Susaimuthu J, Tzanetakis IE, Gergerich RC, Martin RR (2006) Yellow vein-affected blackberries and the presence of a novel Crinivirus. Plant Pathol 55:607–613

    Article  CAS  Google Scholar 

  14. Tzanetakis IE, Halgren AB, Mosier N, Martin RR (2007) Identification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae. Virus Res 127:26–33

    Article  PubMed  CAS  Google Scholar 

  15. Tzanetakis IE, Martin RR (2004) Complete nucleotide sequence of a strawberry isolate of Beet pseudo yellows virus. Virus Genes 28:239–246

    Article  PubMed  CAS  Google Scholar 

  16. Tzanetakis IE, Martin RR (2008) A new method for extraction of double stranded RNA from plants. J Virol Meth 149:167–170

    Article  CAS  Google Scholar 

  17. Tzanetakis IE, Reed J, Martin RR (2005) Nucleotide sequence, genome organization and phylogenetic analysis of Strawberry pallidosis associated virus, a new member of the genus Crinivirus. Arch Virol 150:273–286

    Article  PubMed  CAS  Google Scholar 

  18. Tzanetakis IE, Susaimuthu J, Gergerich RC, Martin RR (2006) Nucleotide sequence of Blackberry yellow vein associated virus, a novel member of the Closteroviridae. Virus Res 116:196–200

    Article  PubMed  CAS  Google Scholar 

  19. Tzanetakis IE, Martin RR (2004) First report of Beet pseudo yellows virus in blackberry in the United States. Plant Dis 88:223

    Article  Google Scholar 

  20. Tzanetakis IE, Wintermantel WM, Cortez AA, Barnes JE, Barrett SM, Bolda MP, Martin RR (2006) Epidemiology of Strawberry pallidosis-associated virus and occurrence of pallidosis disease in North America. Plant Dis 90:1343–1346

    Article  CAS  Google Scholar 

  21. Wintermantel WM, Hladky LL (2010) Methods for detection and differentiation of existing and new crinivirus species through multiplex and degenerate primer RT-PCR. J Virol Meth 170:106–114

    Article  CAS  Google Scholar 

  22. Wintermantel WM, Hladky LL, Gulati-Sakhuja A, Li R, Liu H-Y, Tzanetakis IE (2009) The complete nucleotide sequence and genome organization of Tomato infectious chlorosis virus: a distinct crinivirus most closely related to Lettuce infectious yellows virus. Arch Virol 154:1335–1341

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We would like to thank Dr. R. Larsen for intriguing discussions on DVCV. This project was funded by the US Department of Agriculture under the Specialty Crops Research Initiative (SCRI), award number 2009-51181-06022, and start-up funds from the Arkansas Agricultural Experimental Station to IET.

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Correspondence to Ioannis E. Tzanetakis.

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Tzanetakis, I.E., Wintermantel, W.M., Poudel, B. et al. Diodia vein chlorosis virus is a group-1 crinivirus. Arch Virol 156, 2033–2037 (2011). https://doi.org/10.1007/s00705-011-1055-3

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  • DOI: https://doi.org/10.1007/s00705-011-1055-3

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