Transposable elements: an abundant and natural source of regulatory sequences for host genes
- PMID: 22905872
- DOI: 10.1146/annurev-genet-110711-155621
Transposable elements: an abundant and natural source of regulatory sequences for host genes
Abstract
The fact that transposable elements (TEs) can influence host gene expression was first recognized more than 50 years ago. However, since that time, TEs have been widely regarded as harmful genetic parasites-selfish elements that are rarely co-opted by the genome to serve a beneficial role. Here, we survey recent findings that relate to TE impact on host genes and remind the reader that TEs, in contrast to other noncoding parts of the genome, are uniquely suited to gene regulatory functions. We review recent studies that demonstrate the role of TEs in establishing and rewiring gene regulatory networks and discuss the overall ubiquity of exaptation. We suggest that although individuals within a population can be harmed by the deleterious effects of new TE insertions, the presence of TE sequences in a genome is of overall benefit to the population.
Similar articles
-
Transposable elements as genetic accelerators of evolution: contribution to genome size, gene regulatory network rewiring and morphological innovation.Genes Genet Syst. 2020 Jan 30;94(6):269-281. doi: 10.1266/ggs.19-00029. Epub 2020 Jan 10. Genes Genet Syst. 2020. PMID: 31932541 Review.
-
Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?Mol Biol Evol. 2013 Jun;30(6):1239-51. doi: 10.1093/molbev/mst045. Epub 2013 Mar 13. Mol Biol Evol. 2013. PMID: 23486611 Free PMC article. Review.
-
Epigenetic regulation and functional exaptation of transposable elements in higher plants.Curr Opin Plant Biol. 2014 Oct;21:83-88. doi: 10.1016/j.pbi.2014.07.001. Epub 2014 Jul 25. Curr Opin Plant Biol. 2014. PMID: 25061895 Review.
-
Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints.Mol Biol Evol. 2017 Nov 1;34(11):2856-2869. doi: 10.1093/molbev/msx219. Mol Biol Evol. 2017. PMID: 28961735 Free PMC article.
-
Mobility connects: transposable elements wire new transcriptional networks by transferring transcription factor binding motifs.Biochem Soc Trans. 2020 Jun 30;48(3):1005-1017. doi: 10.1042/BST20190937. Biochem Soc Trans. 2020. PMID: 32573687 Free PMC article. Review.
Cited by
-
m6A RNA demethylase AtALKBH9B promotes mobilization of a heat-activated long terminal repeat retrotransposon in Arabidopsis.Sci Adv. 2023 Dec;9(48):eadf3292. doi: 10.1126/sciadv.adf3292. Epub 2023 Nov 29. Sci Adv. 2023. PMID: 38019921 Free PMC article.
-
Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes.BMC Genomics. 2015 May 12;16(1):375. doi: 10.1186/s12864-015-1579-0. BMC Genomics. 2015. PMID: 25962417 Free PMC article.
-
Ligament versus bone cell identity in the zebrafish hyoid skeleton is regulated by mef2ca.Development. 2016 Dec 1;143(23):4430-4440. doi: 10.1242/dev.141036. Epub 2016 Oct 27. Development. 2016. PMID: 27789622 Free PMC article.
-
Endogenous Retroviruses Activity as a Molecular Signature of Neurodevelopmental Disorders.Int J Mol Sci. 2019 Nov 30;20(23):6050. doi: 10.3390/ijms20236050. Int J Mol Sci. 2019. PMID: 31801288 Free PMC article. Review.
-
Transposable elements drive widespread expression of oncogenes in human cancers.Nat Genet. 2019 Apr;51(4):611-617. doi: 10.1038/s41588-019-0373-3. Epub 2019 Mar 29. Nat Genet. 2019. PMID: 30926969 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources